Structure of PDB 4c4w Chain C Binding Site BS01

Receptor Information
>4c4w Chain C (length=115) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VRFEVPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAED
VDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGE
LRKELGSLVEKIKGL
Ligand information
>4c4w Chain D (length=35) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gagcaagagccauugcacuccgguuugaugaccuc
<<<...<<<<<..........>>>>>......>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4c4w Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein
Resolution2.95 Å
Binding residue
(original residue number in PDB)		K30 G31 T32 N33 E34 K37 V53 D54 I58 K79 I88 E89 V90 P91 C92 A93
Binding residue
(residue number reindexed from 1)		K28 G29 T30 N31 E32 K35 V51 D52 I56 K77 I86 E87 V88 P89 C90 A91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0004526 ribonuclease P activity
GO:0019843 rRNA binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006412 translation
GO:0008033 tRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4c4w, PDBe:4c4w, PDBj:4c4w
PDBsum4c4w
PubMed24482444
UniProtO29494|RL7A_ARCFU Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)

[Back to BioLiP]