Structure of PDB 3out Chain C Binding Site BS01

Receptor Information
>3out Chain C (length=264) Species: 119856 (Francisella tularensis subsp. tularensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATI
QKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAG
VSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIE
EGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKL
IDPSLQASKMLYSLLFENKLLNTTKSNPEYRFYVTDIPLKFRSVGEMFLQ
TEMQHLEIVSLDSY
Ligand information
Ligand IDDGL
InChIInChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m1/s1
InChIKeyWHUUTDBJXJRKMK-GSVOUGTGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(CC(=O)O)[C@H](C(=O)O)N
ACDLabs 12.01O=C(O)C(N)CCC(=O)O
OpenEye OEToolkits 1.7.0C(CC(=O)O)C(C(=O)O)N
CACTVS 3.370N[C@H](CCC(O)=O)C(O)=O
CACTVS 3.370N[CH](CCC(O)=O)C(O)=O
FormulaC5 H9 N O4
NameD-GLUTAMIC ACID
ChEMBLCHEMBL76232
DrugBankDB02517
ZINCZINC000000895124
PDB chain3out Chain C Residue 266 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3out Crystal structure of glutamate racemase from Francisella tularensis subsp. tularensis SCHU S4 in complex with D-glutamate.
Resolution1.65 Å
Binding residue
(original residue number in PDB)		S12 P42 Y43 G44 C74 N75 T76 C183 T184
Binding residue
(residue number reindexed from 1)		S11 P41 Y42 G43 C73 N74 T75 C182 T183
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) D11 S12 C74 E151 C183 H185
Catalytic site (residue number reindexed from 1) D10 S11 C73 E150 C182 H184
Enzyme Commision number 5.1.1.3: glutamate racemase.
Gene Ontology
Molecular Function
GO:0008881 glutamate racemase activity
GO:0016853 isomerase activity
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives
GO:0036361 racemase activity, acting on amino acids and derivatives
Biological Process
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0071555 cell wall organization

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3out, PDBe:3out, PDBj:3out
PDBsum3out
PubMed
UniProtQ5NFN6

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