Structure of PDB 3n9m Chain C Binding Site BS01

Receptor Information

>3n9m Chain C (length=481) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KESDRCGGCGKFTHEMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQ
FEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLGIEVGSKT
WIEDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWGKVFMVKD
MDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLF
RDTKNRPLLYNFLSLEFSDNNEMKEIAKPPRFVQEISMVNRLWPYLPEDQ
RPKVEQFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFA
AYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDS
LVFGGNFLHLGNLEMQMRVYHLENAIRKEIRSEEKFYFPNFELLHWMYMR
NVLLEKITEANQEGSDMREQEKNIWTASQIMKAEMERWMDRELRLGPEKN
AILPTDDKNKIMISVRKQIEIQTKIQNAKNK

Ligand information

InChI=1S/Fe/q+2

CWYNVVGOOAEACU-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Fe+2]
CACTVS 3.341	[Fe++]

Formula

Name

FE (II) ION

PDB chain

3n9m Chain C Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3n9m Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Resolution	2.493 Å
Binding residue (original residue number in PDB)	H495 D497 H567
Binding residue (residue number reindexed from 1)	H270 D272 H342
Annotation score	4

Enzymatic activity

Enzyme Commision number

1.14.11.-

External links

PDB	RCSB:3n9m, PDBe:3n9m, PDBj:3n9m
PDBsum	3n9m
PubMed	20567261
UniProt	Q9GYI0\|KDM7_CAEEL Lysine-specific demethylase 7 homolog (Gene Name=jmjd-1.2)

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