Structure of PDB 3lwr Chain C Binding Site BS01

Receptor Information

>3lwr Chain C (length=120) Species: 2261 (Pyrococcus furiosus)

KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVI
IAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAII
EPGKARDLVEEIAMKVKELM

Ligand information

>3lwr Chain D (length=58)

gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccgug
gcccacaa

<<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>
>>>>....

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3lwr Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase .
• Resolution: 2.203 Å
• Binding residue (original residue number in PDB): K35 G36 T37 N38 E39 K42 R46 V58 D59 K84 E94 V95 A96 A97 A98
• Binding residue (residue number reindexed from 1): K32 G33 T34 N35 E36 K39 R43 V55 D56 K81 E91 V92 A93 A94 A95

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0004526 ribonuclease P activity
• GO:0019843 rRNA binding

Biological Process

• GO:0001682 tRNA 5'-leader removal
• GO:0006364 rRNA processing
• GO:0006412 translation
• GO:0008033 tRNA processing
• GO:0042254 ribosome biogenesis

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3lwr, PDBe:3lwr, PDBj:3lwr
• PDBsum: 3lwr
• PubMed: 20575532
• UniProt: Q8U160|RL7A_PYRFU Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)