Structure of PDB 3lob Chain C Binding Site BS01

Receptor Information
>3lob Chain C (length=309) Species: 12287 (Flock House virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALTRLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKVVSRKDVLNQSIS
FTAGQDTFILIAPTPGVAYWSASVPAGTFPTSATTFNPVNYPGFTSMFGT
TSTSRSNQVSSFRYASMNVGIYPTSNLMQFAGSITVWKCPVKLSTVQFPV
ATDPATSSLVHTLVGLNGVLAVGPDNFSESFIKGVFSQSACNEPNFQFND
ILQGIQTLPPANVSLGSTGQPFTMDSGAEATSGVVGWGNMDTIVIRVSAP
EGAVNSAILKAWSCIEYRPNPNAMLYQFGHDSPPLDEVALQEYRTVARSL
PVAVIAAQN
Ligand information
>3lob Chain F (length=18) Species: 12287 (Flock House virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ASMWERVKSIIKSSLAAA
Receptor-Ligand Complex Structure
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PDB3lob Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		A55 L56 K68 F240 E346 T349 S353 Q362 N363
Binding residue
(residue number reindexed from 1)		A1 L2 K14 F186 E292 T295 S299 Q308 N309
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:3lob, PDBe:3lob, PDBj:3lob
PDBsum3lob
PubMed20164221
UniProtP12870|CAPSD_FHV Capsid protein alpha (Gene Name=alpha)

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