Structure of PDB 3lf2 Chain C Binding Site BS01

Receptor Information
>3lf2 Chain C (length=261) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ
RFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFA
ETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEP
HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAR
EERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSH
IDVSGGLSRHA
Ligand information
Ligand IDNDP
InChIInChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKeyACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
CACTVS 3.341NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
FormulaC21 H30 N7 O17 P3
NameNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
ChEMBLCHEMBL407009
DrugBankDB02338
ZINCZINC000008215411
PDB chain3lf2 Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3lf2 The short-chain oxidoreductase Q9HYA2 from Pseudomonas aeruginosa PAO1 contains an atypical catalytic center.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		G15 S18 A39 R40 D41 C66 D67 V68 A95 Q97
Binding residue
(residue number reindexed from 1)		G11 S14 A35 R36 D37 C62 D63 V64 A91 Q93
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) G19 S146 T159 R163 A203
Catalytic site (residue number reindexed from 1) G15 S142 T155 R159 A199
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3lf2, PDBe:3lf2, PDBj:3lf2
PDBsum3lf2
PubMed20340135
UniProtQ9HYA2

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