Structure of PDB 2wnv Chain C Binding Site BS01

Receptor Information
>2wnv Chain C (length=129) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLY
YFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEE
VWLAVNDYYDMVGIQGSDSVFSGFLLFPD
Ligand information
Ligand ID2DR
InChIInChI=1S/C5H10O4/c6-2-4-3(7)1-5(8)9-4/h3-8H,1-2H2/t3-,4+,5+/m0/s1
InChIKeyPDWIQYODPROSQH-VPENINKCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1C1C(C(OC1O)CO)O
OpenEye OEToolkits 1.6.1C1[C@@H]([C@H](O[C@H]1O)CO)O
CACTVS 3.352OC[CH]1O[CH](O)C[CH]1O
CACTVS 3.352OC[C@H]1O[C@@H](O)C[C@@H]1O
ACDLabs 10.04OCC1OC(O)CC1O
FormulaC5 H10 O4
Name2-deoxy-beta-D-erythro-pentofuranose;
2-deoxy-beta-D-ribofuranose;
2-deoxy-beta-D-erythro-pentose;
2-deoxy-D-erythro-pentose;
2-deoxy-erythro-pentose
ChEMBL
DrugBank
ZINCZINC000002504594
PDB chain2wnv Chain C Residue 1218 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2wnv Cutting Edge: C1Q Binds Deoxyribose and Heparan Sulfate Through Neighboring Sites of its Recognition Domain.
Resolution1.25 Å
Binding residue
(original residue number in PDB)		R98 R111 N113
Binding residue
(residue number reindexed from 1)		R10 R23 N25
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:2wnv, PDBe:2wnv, PDBj:2wnv
PDBsum2wnv
PubMed20548024
UniProtP02747|C1QC_HUMAN Complement C1q subcomponent subunit C (Gene Name=C1QC)

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