Structure of PDB 2gfq Chain C Binding Site BS01

Receptor Information

>2gfq Chain C (length=278) Species: 70601 (Pyrococcus horikoshii OT3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

FQGHMKVIMTTKVDKASMNIMNKLIENFGFKETEYVFEGNPVYKRGDVLI
LTTNDEMIYYDYLDREIENQLGFKPEIIAFASRHSSKQKLPALTTHVTGN
WGKAMYGGKDESFAVAIPSAMKLSLLKMSELNDLGWTVCYEATHHGPTEL
EVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSFKVALGIGG
GHYAPKQTKRALEGDLAFGHILPKYAQPVSRDVMIKALNRFGEKVEAIYV
DWKGSRGETRQLAKSLAQELGLEFIKDG

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

2gfq Chain C Residue 2019 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2gfq Structure of hypothetical protein ph0006 from Pyrococcus horikoshii
Resolution	1.75 Å
Binding residue (original residue number in PDB)	H92 H141 E154
Binding residue (residue number reindexed from 1)	H96 H145 E158
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.1.1.96: D-aminoacyl-tRNA deacylase.

Gene Ontology

	Molecular Function
GO:0008270	zinc ion binding
GO:0016787	hydrolase activity
GO:0016788	hydrolase activity, acting on ester bonds
GO:0046872	metal ion binding
GO:0051499	D-aminoacyl-tRNA deacylase activity

	Biological Process
GO:0019478	D-amino acid catabolic process
GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity

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Molecular Function

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Biological Process

External links

PDB	RCSB:2gfq, PDBe:2gfq, PDBj:2gfq
PDBsum	2gfq
PubMed
UniProt	O57774\|DTDA_PYRHO D-aminoacyl-tRNA deacylase (Gene Name=dtdA)

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