Structure of PDB 2fm2 Chain C Binding Site BS01

Receptor Information
>2fm2 Chain C (length=151) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNV
DQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLS
PRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETT
M
Ligand information
>2fm2 Chain D (length=16) Species: 2847144 (hepatitis C virus genotype 1a) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GSVVIVGRIVLSGKPA
Receptor-Ligand Complex Structure
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PDB2fm2 Mutations conferring resistance to SCH6, a novel hepatitis C virus NS3/4A protease inhibitor. Reduced RNA replication fitness and partial rescue by second-site mutations
Resolution2.7 Å
Binding residue
(original residue number in PDB)		V29 G31 E32 V33 I35 V36 S37 R62 T63 I64 A65 W85 P88 G90
Binding residue
(residue number reindexed from 1)		V1 G3 E4 V5 I7 V8 S9 R34 T35 I36 A37 W57 P60 G62
Enzymatic activity
Catalytic site (original residue number in PDB) H57 D81 G137 S139
Catalytic site (residue number reindexed from 1) H29 D53 G109 S111
Enzyme Commision number 3.4.21.98: hepacivirin.
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis
GO:0019087 transformation of host cell by virus

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Molecular Function
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Biological Process
External links
PDB RCSB:2fm2, PDBe:2fm2, PDBj:2fm2
PDBsum2fm2
PubMed16352601
UniProtQ9ELS8

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