Structure of PDB 2bq5 Chain C Binding Site BS01
Receptor Information
>2bq5 Chain C (length=129) Species:
12022
(Escherichia phage MS2) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQ
SSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLAMKLTIPIFATNSD
CELIVKAMQGLLKDGNPIPSAIAANSGIY
Ligand information
>2bq5 Chain S (length=17) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
caugaggauuacccaug
<<<<.<<....>>>>>>
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
2bq5
Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2.
Resolution
2.91 Å
Binding residue
(original residue number in PDB)
T45 S47 R49 K61 E63 Y85
Binding residue
(residue number reindexed from 1)
T45 S47 R49 K61 E63 Y85
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0005198
structural molecule activity
GO:0042802
identical protein binding
Biological Process
GO:0006417
regulation of translation
GO:1904972
negative regulation of viral translation
Cellular Component
GO:0019028
viral capsid
GO:0039617
T=3 icosahedral viral capsid
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:2bq5
,
PDBe:2bq5
,
PDBj:2bq5
PDBsum
2bq5
PubMed
16531233
UniProt
P03612
|CAPSD_BPMS2 Capsid protein
[
Back to BioLiP
]