Structure of PDB 1zdi Chain C Binding Site BS01

Receptor Information
>1zdi Chain C (length=129) Species: 12022 (Escherichia phage MS2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQ
SSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSD
CELIVKAMQGLLKDGNPIPSAIAANSGIY
Ligand information
Receptor-Ligand Complex Structure
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PDB1zdi The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		V29 T45 C46 S47 T59 K61 E63 Y85
Binding residue
(residue number reindexed from 1)		V29 T45 C46 S47 T59 K61 E63 Y85
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
GO:0042802 identical protein binding
Biological Process
GO:0006417 regulation of translation
GO:1904972 negative regulation of viral translation
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1zdi, PDBe:1zdi, PDBj:1zdi
PDBsum1zdi
PubMed9245600
UniProtP03612|CAPSD_BPMS2 Capsid protein

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