Structure of PDB 1yey Chain C Binding Site BS01

Receptor Information
>1yey Chain C (length=435) Species: 340 (Xanthomonas campestris pv. campestris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGY
GLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLR
WLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDF
RYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDE
KLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDAN
QRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTG
EHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFP
HAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHG
RYLAPEVPGFSAEMHPASIAEFSYPDGRFWVEDLA
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1yey Chain C Residue 6003 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1yey Crystal Structure of L-fuconate Dehydratase from Xanthomonas campestris pv. campestris str. ATCC 33913
Resolution2.34 Å
Binding residue
(original residue number in PDB)		D248 E274 E301
Binding residue
(residue number reindexed from 1)		D248 E274 E301
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) T55 T190 K218 K220 D248 N250 E274 G300 E301 D324 P350 H351 A352 D368 K375 E382
Catalytic site (residue number reindexed from 1) T55 T190 K218 K220 D248 N250 E274 G300 E301 D324 P350 H351 A352 D368 K375 E382
Enzyme Commision number 4.2.1.68: L-fuconate dehydratase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0016829 lyase activity
GO:0016836 hydro-lyase activity
GO:0046872 metal ion binding
GO:0050023 L-fuconate dehydratase activity
Biological Process
GO:0016052 carbohydrate catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1yey, PDBe:1yey, PDBj:1yey
PDBsum1yey
PubMed
UniProtQ8P3K2|FUCD_XANCP L-fuconate dehydratase (Gene Name=XCC4069)

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