Structure of PDB 1vdd Chain C Binding Site BS01

Receptor Information
>1vdd Chain C (length=196) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAK
RDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYR
GLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATA
LYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1vdd Chain C Residue 232 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1vdd Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair
Resolution2.5 Å
Binding residue
(original residue number in PDB)		C57 C69 C72
Binding residue
(residue number reindexed from 1)		C56 C68 C71
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
GO:0006302 double-strand break repair
GO:0006310 DNA recombination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1vdd, PDBe:1vdd, PDBj:1vdd
PDBsum1vdd
PubMed15116069
UniProtQ9ZNA2|RECR_DEIRA Recombination protein RecR (Gene Name=recR)

[Back to BioLiP]