Structure of PDB 1opo Chain C Binding Site BS01

Receptor Information
>1opo Chain C (length=268) Species: 11986 (Carnation mottle virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KSMTMSKTELLSTVKGTTGVIPSFEDWVVSPRNVAVFPQLSLLATNFNKY
RITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGFYDLGKHVETA
AQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFDKADTVVGE
LFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAG
KWCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQIL
KITKTSAEQPLQWVVYRM
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain1opo Chain B Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1opo The atomic structure of Carnation Mottle Virus capsid protein
Resolution3.2 Å
Binding residue
(original residue number in PDB)		N128 D200
Binding residue
(residue number reindexed from 1)		N48 D120
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

View graph for
Molecular Function
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Cellular Component
External links
PDB RCSB:1opo, PDBe:1opo, PDBj:1opo
PDBsum1opo
PubMed8307192
UniProtP04383|CAPSD_CARMV Capsid protein (Gene Name=ORF4)

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