Structure of PDB 1nov Chain C Binding Site BS01

Receptor Information
>1nov Chain C (length=324) Species: 12288 (Nodamura virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRRAAPRQQQRQQSNRALKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQ
GLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPL
ASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQV
YKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFI
EGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYT
GLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPAN
DEYALAAYRKIARDIPIAVACKDN
Ligand information
Receptor-Ligand Complex Structure
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PDB1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		L64 K68 F71 A72 D75 F76 Y240 Y342 K349 I350 I354 V358 D362 N363
Binding residue
(residue number reindexed from 1)		L25 K29 F32 A33 D36 F37 Y204 Y303 K310 I311 I315 V319 D323 N324
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum1nov
PubMed15299863
UniProtP12871|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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