Structure of PDB 1kc8 Chain C Binding Site BS01 |
|
>1kc8 Chain A (length=2754)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
uaugccagcugguggauugcucggcucaggcgcugaugaaggacgugcca agcugcgauaagccauggggagccgcacggaggcgaagaaccauggauuu ccgaaugagaaucucuaacaauugcuucgcgcaaugaggaaccccgagaa cugaaacaucucaguaucgggaggaacagaaaacgcaaugugaugucguu aguaaccgcgagugaacgcgauacagcccaaaccgaagcccucacgggca auguggugucagggcuaccucucaucagccgaccgucucgacgaagucuc uuggaacagagcgugauacagggugacaaccccguacucgagaccaguac gacgugcgguagugccagaguagcggggguuggauaucccucgcgaauaa cgcaggcaucgacugcgaaggcuaaacacaaccugagaccgauagugaac aaguagugugaacgaacgcugcaaaguacccucagaagggaggcgaaaua gagcaugaaaucaguuggcgaucgagcgacagggcauacaaggucccucg acgaaugaccgacgcgcgagcguccaguaagacucacgggaagccgaugu ucugucguacguuuugaaaaacgagccagggagugugucugcauggcaag ucuaaccggaguauccggggaggcacagggaaaccgacauggccgcaggg cuugcccgagggccgccgucuucaagggcggggagccauguggacacgac ccgaauccggacgaucuacgcauggacaagaugaagcgugccgaaaggca cguggaagucuguuagaguugguguccuacaauacccucucgugaucuau guguaggggugaaaggcccaucgaguccggcaacagcugguuccaaucga aacaugucgaagcaugaccuccgccgagguagucugugagguagagcgac cgauugguccugucaaacuccaaacuuacagacgccguuugacgcgggga uuccggugcgcgggguaagccuguguaccaggaggggaacaacccagaga uagguuaagguccccaaguguggauuaaguguaauccucugaaggugguc ucgagcccuagacagccgggaggugagcuuagaagcagcuacccucuaag aaaagcguaacagcuuaccggccgagguuugaggcgcccaaaaugaucgg gacucaaauccaccaccgagaccuguccguaccacucauacugguaaucg aguagauuggcgcucuaauuggauggaaguaggggugaaaacuccuaugg accgauuagugacgaaaauccuggccauaguagcagcgauagucggguga gaaccccgacggccuaauggauaaggguuccucagcacugcugaucagcu gaggguuagccgguccuaagucauaccgcaacucgacuaugacgaaaugg gaaacggguuaauauucccgugccacuaugcagugaaaguugacgcccug gggucgaucacgcugggcaucgcccagucgaaccguccaacuccguggaa gccguaauggcaggaagcggacgaacggcggcauagggaaacgugauuca accuggggcccaugaaaagacgagcauaguguccguaccgagaaccgaca cagguguccauggcggcgaaagccaaggccugucgggagcaaccaacguu agggaauucggcaaguuagucccguaccuucggaagaagggaugccugcu ccggaacggagcaggucgcagugacucggaagcucggacugucuaguaac aacauaggugaccgcaaauccgcaaggacucguacggucacugaauccug cccagugcagguaucugaacaccucguacaagaggacgaaggaccuguca acggcgggggucuuaagguagcguaguaccuugccgcaucaguagcggcu ugcaugaauggauuaaccagagcuucacugucccaacguugggcccggug aacuguacauuccagugcggagucuggagacacccagggggaagcgaaga cccuauggagcuuuacugcaggcugucgcugaggacucucacuccgggag gaggacaccgauagccgggcaguuugacuggggcgguacgcgcucgaaaa gauaucgagcgcgcccuauggcuaucucagccggggacccggcgaagagu gcaagagcaaaagauagcuugacaguguucuucccaacgaggaacgcuga cgcgaaagcguggucuagcgaaccaauuagccugcuugaugcgggcaauu gaugacagaaaagcuacccuagggauaacagagucgucacucgcaagagc acauaucgaccgaguggcuugcuaccucgaugucgguucccuccauccug cccgugcagaagcgggcaagggugagguuguucgccuauuaaaggagguc gugagcuggguuuagaccgucgugagacaggucggcugcuaucuacuggg uguguaggugucugacaagaacgaccguauaguacgagaggaacuacggu ugguggccacugguguaccgguuguucgagagagcacgugccggguagcc acgccacacgggguaagagcugaacgcaucuaagcucgaaacccacuugg aaaagagacaccgccgaggucccgcguacaagacgcggucgauagacucg gggugugcgcgucgagguaacgagacguuaagcccacgagcacuaacaga ccaa |
..<<<<<<<<<<<.....((..((<<<<<<.[<<......<<<<<<.((. .((.>>>.....<<<<<<...<<<))..)).>>>......>>>>>>...> >>....<<<...>>>.....<<<<<.....>>>>>.>>...<<<<<<... ..<......>......>>>>>.>.........<<.....>>...<<<<<. ....<<.....>>....>>>>>...<<<...<<<...<<<<....>>>>. ....>>>....<<<<<<<<......<..<.....<<<<<<<......<<< <......>>>>.((......<<<.....))>>>....>>>>>>>...... >..>...>>>>>>.>>......<<<<<<<........>>>>>>>...... <<<<<.<<<<<<>>>>>..>>>......]..>>>>>>.)).......... .....<<....>>....))..........<<<.....>>>.......... .........>>>>>>>>>>>.......<<<<<<<<<<....<.<<<<..< <.........<<<<<....>>>>>.........>>..>>>>...>.>>>> >>>>>>...<<<........>>>.<<<<<<...<<<<<<<<<<<<<<..< <<...<<<<<...>>>>>...>>>...<<....>>....<<<<<...<<< <..>>>>...>>>>><<<<<<....>>>>>>...>>>>>>>>>>>>>>.< <.<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>> >>>.....>>>....<<<..<<.<<........>>>>.>>>....>>>>> >>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.. ..<<<<<....>>>>><.<<<<<<...<<<.<<<<<<<<<...<<<.... .<<..<<.>>..>>...>>.>...>>>>>>>>>>>>.......>>>>>>. .>..<<<<<<<<<<.....>>>>>>>>>>....<<<......>>>...<< <<<<<...<<<(((.....<<<<<<.....<<...........<<<.<<< <<<<<<<.......<<<<<.<<...<<<<.......>>>>...>>..... ..<<<<......>>>>.>>>>>...>>>>>>>>>>>>>..........)) )>>....>>>>>>.>>>...>>>>>>><<<<<<<.......>>>>>..>> ....>>>>>><...<<<<<<<<......<<<<<<<<....>>>>>>>>.. .>>>>>>>>....>.....>>>>>><<.....<........<<<<<<... ....>>>>>><<<<<...<<<<..<<...<<<<<<...<<.....>>.>> >>>>....((<<<<<<...<<<<<<.<<.....>>..>>>>>>.....>> >..<<<<<........>>>>>))<<<<<<<<.......<<<...<<<<<< <<...<<<<<<<<<<<<<.[[>>>>>>><...<<<<<....<<<<<.... <<<<...>>>>.....>>>>>.....>>>>>....>......>>>>>>.. .>>>>>>>>.........>>>..>>>>>>>>.>>>..>>.....<<.... ..>>.>>>>..<<<.......>>>.>>>>>...<<<<.....<<<<<<<< .<<.........<.....<<<<<...............>>>>><<<<<<< <<.....>>>>>>>>>............<<<<<<<<<..<<<........ .>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.< <<..<<<<<<<..<<<.....<<<<......>>>>.....>>>>>>>>.. >>>>><<...>>........<...........<<<<<.......>>>>>. ....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>.>. ...>>.((.<<<<<<......))>>>>>>.<<<<<<<..(((.[[..... .<<<<.[[<<<<..<<<<<.<<<<<<<<..<<....>>...<<<<....> >>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<..... ......>>>>>>..<<...<<<<<<<...<<<<<<..>>>>>>.....<< ...(((>>....>>>>>>>...<<<<<<<<<.........>>>>>>>>>. <<<....>>>.>>))).......<<<<<.<<<<<.>>>>>>>>>>>>>>> >..........>>>>..]]>>>>.......<<<<.<.<<<<<<...<<.. .....>>...>>>>>>...>>>>.>.......<<<<<..<<<<<..<<<< <<<<<......>>>>>>>..>>..<<<<.....>>>>......>>>>>.. ....>>>.>>....<<<<<<<....>>>.>>>>....]]..))).>>>>> >>....<<<<<<...<<<<..<<<<<<<<...............>>>>>> >><<<<<...<<<<...<<<<<<<<<<]]..>>>>>...>>>>>...>>> >.>>>>>..<<<....<<<<<...........>>>>>....>>>.>>>>. ......>>>>>>.....<<<<<<<<<.......>>>>>....<<<.<<<< <<<<....<<<<<..........>>>>>...>>>>.>>>>..>>>...>> >>.. |
|
Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
PDB | 1kc8 Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit |
Resolution | 3.01 Å |
Binding residue (original residue number in PDB) | G1 R2 R3 G6 Q7 R8 R9 G10 R11 G12 T13 S14 T15 R17 A18 S20 H21 Y23 K24 A25 D26 K31 H47 P49 R51 S52 S110 S111 G113 K117 F118 A119 R120 A121 S122 G123 V124 L140 P141 S142 E144 K146 G162 G163 R164 T165 K167 P168 F169 V170 K171 A172 G173 K175 H176 H177 K178 K180 R182 G183 T184 K185 W186 P187 N188 V189 R190 G191 V192 M194 N195 A196 V197 D198 F201 G203 G204 R206 Q207 H208 P209 G210 K211 P212 K213 S214 I215 S216 R217 N218 P220 P221 G222 R223 K224 V225 G226 D227 I228 A229 S230 K231 R232 T233 G234 R235 G236 |
Binding residue (residue number reindexed from 1) | G1 R2 R3 G6 Q7 R8 R9 G10 R11 G12 T13 S14 T15 R17 A18 S20 H21 Y23 K24 A25 D26 K31 H47 P49 R51 S52 S110 S111 G113 K117 F118 A119 R120 A121 S122 G123 V124 L140 P141 S142 E144 K146 G162 G163 R164 T165 K167 P168 F169 V170 K171 A172 G173 K175 H176 H177 K178 K180 R182 G183 T184 K185 W186 P187 N188 V189 R190 G191 V192 M194 N195 A196 V197 D198 F201 G203 G204 R206 Q207 H208 P209 G210 K211 P212 K213 S214 I215 S216 R217 N218 P220 P221 G222 R223 K224 V225 G226 D227 I228 A229 S230 K231 R232 T233 G234 R235 G236 |
|
|
Enzyme Commision number |
? |
|
|
|