Structure of PDB 1cde Chain C Binding Site BS01
Receptor Information
>1cde Chain C (length=209) Species:
562
(Escherichia coli) [
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MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAG
IATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHY
AGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL
QAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDG
QRLPPQGYA
Ligand information
Ligand ID
GAR
InChI
InChI=1S/C7H15N2O8P/c8-1-4(10)9-7-6(12)5(11)3(17-7)2-16-18(13,14)15/h3,5-7,11-12H,1-2,8H2,(H,9,10)(H2,13,14,15)/p-2/t3-,5-,6-,7-/m1/s1
InChIKey
OBQMLSFOUZUIOB-SHUUEZRQSA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C([C@@H]1[C@H]([C@H]([C@@H](O1)NC(=O)CN)O)O)OP(=O)([O-])[O-]
ACDLabs 10.04
O=C(NC1OC(C(O)C1O)COP([O-])([O-])=O)CN
CACTVS 3.341
NCC(=O)N[CH]1O[CH](CO[P]([O-])([O-])=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0
C(C1C(C(C(O1)NC(=O)CN)O)O)OP(=O)([O-])[O-]
CACTVS 3.341
NCC(=O)N[C@@H]1O[C@H](CO[P]([O-])([O-])=O)[C@@H](O)[C@H]1O
Formula
C7 H13 N2 O8 P
Name
GLYCINAMIDE RIBONUCLEOTIDE
ChEMBL
DrugBank
ZINC
PDB chain
1cde Chain C Residue 222 [
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Receptor-Ligand Complex Structure
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PDB
1cde
Structures of apo and complexed Escherichia coli glycinamide ribonucleotide transformylase.
Resolution
2.5 Å
Binding residue
(original residue number in PDB)
N10 G11 S12 N13 G87 P109 Q170 E173
Binding residue
(residue number reindexed from 1)
N10 G11 S12 N13 G87 P109 Q170 E173
Annotation score
5
Enzymatic activity
Catalytic site (original residue number in PDB)
N106 H108 S135 D144
Catalytic site (residue number reindexed from 1)
N106 H108 S135 D144
Enzyme Commision number
2.1.2.2
: phosphoribosylglycinamide formyltransferase 1.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0004644
phosphoribosylglycinamide formyltransferase activity
GO:0016740
transferase activity
Biological Process
GO:0006164
purine nucleotide biosynthetic process
GO:0006189
'de novo' IMP biosynthetic process
GO:0006974
DNA damage response
GO:0009058
biosynthetic process
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1cde
,
PDBe:1cde
,
PDBj:1cde
PDBsum
1cde
PubMed
1631098
UniProt
P08179
|PUR3_ECOLI Phosphoribosylglycinamide formyltransferase (Gene Name=purN)
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