Structure of PDB 1bcc Chain C Binding Site BS01
Receptor Information
>1bcc Chain C (length=379) Species:
9031
(Gallus gallus) [
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APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLL
LAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGR
GLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLF
SAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFL
HESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLL
GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI
LFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIII
GQMASLSYFTILLILFPTIGTLENKMLNY
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
1bcc Chain C Residue 381 [
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Receptor-Ligand Complex Structure
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PDB
1bcc
Electron transfer by domain movement in cytochrome bc1.
Resolution
3.16 Å
Binding residue
(original residue number in PDB)
Q45 G49 L50 A53 R81 H84 G131 L134 P135 H183 F184 P187
Binding residue
(residue number reindexed from 1)
Q44 G48 L49 A52 R80 H83 G130 L133 P134 H182 F183 P186
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
H202 S206 K228 D229 E272
Catalytic site (residue number reindexed from 1)
H201 S205 K227 D228 E271
Enzyme Commision number
1.10.2.2
: Transferred entry: 7.1.1.8.
Gene Ontology
Molecular Function
GO:0008121
ubiquinol-cytochrome-c reductase activity
GO:0009055
electron transfer activity
GO:0016491
oxidoreductase activity
GO:0020037
heme binding
GO:0046872
metal ion binding
Biological Process
GO:0006122
mitochondrial electron transport, ubiquinol to cytochrome c
GO:0006979
response to oxidative stress
GO:0022904
respiratory electron transport chain
GO:1902600
proton transmembrane transport
Cellular Component
GO:0005737
cytoplasm
GO:0005739
mitochondrion
GO:0005743
mitochondrial inner membrane
GO:0016020
membrane
GO:0045275
respiratory chain complex III
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1bcc
,
PDBe:1bcc
,
PDBj:1bcc
PDBsum
1bcc
PubMed
9565029
UniProt
P18946
|CYB_CHICK Cytochrome b (Gene Name=MT-CYB)
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