Structure of PDB 6z1p Chain Bw Binding Site BS01

Receptor Information
>6z1p Chain Bw (length=662) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EKFRVLAKKTTIPNRRLMPPIEQFRTYTKQILPQMEQSIEISMLQKQFQE
IKSEELKQDLIRAYTRRRIKDLANQFSKLHHDLPELNVYSFVPIGDHDFE
DVGKYTMFPATDIQKYFLNNQMFGEYFEVEFYRTRKFGVMISEEGAKIVN
HLQHIQDNKETPLNYINLFKRYPTEKIKEKIIEDEDVYPCLFHDLAKAAI
EELEAYRNNTLFERLFCLPSLFDLTINVVLRELGENPNALLPLFLKQQEQ
IDNPQFTGKKVFNQLFEQIFKQINERAHPEFSNPQQYKQFLEDIQKFQIS
IKDCTEHEIDLIKYCKEPRWIPRNIKKYSLRKFIGFNSGALLYGDSGSGK
SGTLLYVTMWAHYKKWIVLNVPSAFNWTQKEWKFVRHPKTGLYIQNELAQ
DWMKSFKHANSDLLKQIPVNMDIYGFYNLSGQHDKECDAVPDLYYKDRKV
NFEEHKKFLTEEENIIDGETNKDFRVRLKEKLTNPLTVLDIIDYGLENEF
FATNALYEVLEQIRNQDKFCVLKVIDGYNFMYKRSIYPSFRYATDTQLRS
TVPPYHLTVPRAFLNFDGHKFKNGFVLCASSVKNFHKHIFGPDSIDFPLG
YSHEMRGLPLDDFRVMCHYYLQNDFWLADNVAKNSSDFLWMHSQGNWAQA
HKVMLGHQLDSM
Ligand information
>6z1p Chain Bb (length=1385) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uguuuacagcuuaaagauuauuuuguacaauauuagguaauuauuucuaa
aacuguuuaauaauauuauuuuuaguaaaauaagccuagauguuuaguug
aauuuagagauuguucaaccacauacggguaugaaaacuacccuaucuuu
uugacagcagugaggaauuuuggacaauaugcgaaagcaugauccagcga
acuaauggaaacgaagaagauagcaauauuguaaaguuuagugcgagaau
uaacaaaugaguaaauucuaggagaagcucuggcuaauacaugugccagc
agccgcgguaauacaugaggagcaagcguuacccacauugacugggugua
uuaaauacauaggugauuacaaauacuacuuuaaaagucaauuaaaaacc
uaauauaguaguuuuuuuguaaaugauaauuaaauauaaggauaggagau
uuauagaacaacgauuaaauguaguuacacuauagagcuugccauaaacu
aaggugcuuuccuauauuuaauuauagcugauguaugaaaguacggggau
cgauaaggauuaguuucccuaguaguccguacuguaaaagaugaauacuu
caugaauuaaauauucagggauagcuaacgcaaaguauucuacucgggga
guauaaucgcaagauuaaaacuuaacugaauuggcgggaauuuguucgaa
cgguggaacaugugguuuaaugcgauaauccacgcaaaaucuuaccaacg
uuucaggcuuuaucaguaguaugauuaauaucaaaauuauaugauuuagu
acggaauugcauggcugucgucaguucgugcugugaaguuuaggauuaag
uucuuuuuaacgaaugcaacccuauaaguaaguuuuuauuuuaaaauaac
uuaauuuuuuaaauauacuuauuuaaucuauaauuagaauauauugaauc
uauucuguauauucuuuuauagggguuauaggcugaagucaagucccuau
ggucuuuauacguugggcuacacacguguuacaaggguaaauacaaaaag
acgcaaaaaaguaauuuugagcaaaccuuuaaaaauuaccuuaguucaga
uuguuuuaugaaauucuaaaacaugaagaugaaaucguuaguaauuguaa
auuauuauguuacagugaaacaauagucaaauuuugcacacaccgcccau
cacgcucggaaagucaauaauagcggaagauuugaaaaacucugcgcaaa
acuaauauuauuuuuauauuaguuggcauuauauuauuuuuuaauggcau
gguugaaaaguaguauccaaucuaguauugguaauuugagugaaguugac
acaagguacugguaggggaaccuguugguggaaua
............................<<<....<<<..<<<<<<<<<<
<.......<<<<....>>>>>>>>>..>>>>>>>>>.....>>>..<<<<
<<<<....>>>>...>>>>....<<.<<<<.........>>>>>><<...
..>>.................<<<...<<<<<....>>>>.>>>>.....
........<<<<......<<<<....>>>>.....>>>>......<<<<<
..<........>..>>>>>.......<<<<<(((.....<<<<.....<<
.)))>>.......>>>>.>>>>>.....................<<<((.
....<<<<<..<<<.<<<<<<<<..<<<<<.<<.................
...>>.>>>>>....>>>>>>.>>..<<<<<<<<<<<.<<<<.<<<<<.<
<<<<<<....<<<......>>>.......>>>>>>.>>>>.......<<.
...>>.>>.>>>>>>>>>>>>>>>..>>>..>>>>>...<<<<<<<<...
<....<<<.........>>>....>>>>>>>>>.........<<<<<<.<
<.<<<<.......>>>>..>>..<<..))>>...>>>>>>.>>>.<<<..
...<<<<<....>>>>>...>>>.........<<<<.<<<<<<<.....<
<<<<..<<<<<<<<<<......<<........>>..........<<<<<<
<.....<<<..<<<..<<<..<<<<....>>>>...>>>...>>>..>>>
..<<.<<<..<<<<<<.......<<<<<<<<<....>>>...<<<.....
.>>>.....>>>>>>.....<<<.<<<<<<<<....<<<<<.<<<<....
.....>>>>.>>>>>..>>>>>>>>..<<<<<<...<<<<<<<<.<<...
...>>.>>>>>>>>..>>>>>>.......>>>.........>>>...>>>
>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<.<....<<<<
..<<..<<<<....>>>>..>>....>>>>....>>>>>>......<...
.<<<<<<<........>>>>>>>....>.....>>>>>.....<<<<<<<
.........>>>>>>>...........>>>>>>>>>>.>........<<.
<.<<<<<<<<..<<<<<<<.<<<.....<<<.<......<.<<<.<<..<
<<<<<<<<.......>>>>>>>>>.......<...........>..>>.>
>>..>.......>.>>>....>>>.>>>>>>>..>>>>>>>>..>.>>..
.......<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z1p Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		E358 R364 K373 R489 N625 F626 H627 K628
Binding residue
(residue number reindexed from 1)		E317 R323 K332 R448 N584 F585 H586 K587
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6z1p, PDBe:6z1p, PDBj:6z1p
PDBsum6z1p
PubMed32553108
UniProtQ22RT0

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