Structure of PDB 8q87 Chain Bv Binding Site BS01 |
|
>8q87 Chain B5 (length=3638)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg cgccggauccccgccuccgccgggcgggccggggaccgccgcccggccgg cguccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccg gcuccgggacggcugggaagggcugccggcgggcagguggcccggcgccg cgcgagcggccgccggguguuauagccgccgggcccggaucgucgccgaa ucccggggccgagggagaggaccgccgccgcgcccucccccgggggacgg gcccgccggcccccggcgccgcuguccgggggcggacugcgcucagugcg ccccgaccggcggcgccgccgggccgggcucgggccacgccagggcgccc gggguccgcggcgacgucggcuacccacccgacccgucuugaaacacgga ccaaggagucuagcacgcgcgcgagucggcggcucgcgcgaaagcccgcg gcgcaaugaaggugagggccggcgcgcgccggcugaggugggaucccggg gcggcaggccggaaggccccgggcgcaccaccggcccgucucgcccgccu cgccggggagguggagcaugagcgcgcgugcuaggacccgaaagauggug aacuaugccugggcagggcgaagccagaggaaacucugguggagguccgu agcgguccugacgugcaaaucggucguccgacccggguauaggggcgaaa gacuaaucgaaccaucuaguagcugguucccuccgaaguuucccucagga uagcuggcgcucggggcggcggugcaguuuuacccgguaaagcgaaugau uagaggucuuggggccgaaacgaucucaaccuauucucaaacuuucaaug gguaagacgcccggcucgcuggcguggagccgggccguggaaugcgagcg cucagugggccacuuuugguaagcagaacuggcgcugcgggaugaaccga acgccggguuaaggcgcccgaugccgacgcucaucagagcccagaaaagg uguugguugaucuagacagcaggacgguggccauggaagucggaacccgc uaaggaguguguaacaacucaccugccgaaucaacuagcccugaaaaugg auggcgcuggagcgucgggcccauacccggccgucgccggcggugcggag ccgcgggggcuacgccgcgacgaguaggagggccgcugcggugcgccugg aagccuggggcgcgggcccggguggagccgccgcaggugcagaucuuggu gguaguagcaacuauucaaacgagagcuuugaaggccgaaguggagcagg guuccaugugaacagcaguugaacaugggucagucgguccuaagcgauag gcgagcgccguuccgaagggacgggcgauggccuccguugcccucagccg aucgaaagggagucggguucagauccccgaauccggagcggcggagacgg gcgccgcgaggcgcccagugcgguaacgcaagcgaucccggagaagccgg cgggagccccggggagaguucucuuuucuuugugaagggccgggcgcccu ggaacggguucgccccgagagaggggcccgcgccuuggaaagcgucgcgg uuccggcggcguccggugagcucucgcuggcccgugaaaauccgggggag aggguguaaaucucgcgccgggccguacccauauccgcagcaggucucca aggugaacagccucuggcauguuggaccaauguagguaagggaagucggc aagccggauccguaacuucgggauaaggauuggcucuaagggcugguagc agccggcuuagaacuggugcggaccaggggaauccgacuguuuaauuaaa acaaagcaucgcgaaggcccgcggcggguguugacgcgaugugauuucug cccagugcucugaaugucaaagugaagaaauucaaugaagcgcggguaaa cggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucu aauuagugacgcgcaugaauggaugaacgagauucccacugucccuaucu acuauccagcgaaaccacagccaagggaacgggcuuggcggaaucagcgg ggaaagaagacccuguugagcuugacucuagucuggcgcugugaagagac augagagguguagaauaagugggaggccccggccgccggugaaauaccac uacucugaucguuuuuucacuuacccggugaggcgggggggcgagccccg aggggcucucgcuucuggcgccaagcgcccggcgcgcgccgggcgcgacc cgcuccggggacagcgucagguggggaguuugacuggggcgguacaccug ucaaagcguaacgcagguguccuaaggcgagcucagggaggccagaaacc ucccguggagcagaagggcaaaagcucgcuugaucuugauuuucaguacg aauacagaccgugaaagcggggccucacgauccuucugacuuuuuggguu uuaagcaggaggugucagaaaaguuaccacagggauaacuggcuuguggc ggccaagcguucauagcgacgucgcuuuuugauccuucgaugucggcucu uccuaucauugugaagcagaauucaccaagcguuggauuguucacccacu aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua cccuacugaugauguguuguugcgcuaguaauccugcucaguacgagagg aaccgcagguucagacauuugguguaugugcuuggcugaggagccacugg agcgaggcuaccaucugugggauuaugacugaacgccucuaagucagaau ccccccuaaacguagcgauaccgcagcgccgaggcgccucggugggcucg cgauagccggccgccgccccccucgggcgggcggucggugcggagcgccg cucguggucgggaccggagcgcggacagauguggcgccgccucucccccg ccgcguaccgcauguucguggggaacccggugcuaaaucauucguagacg accugauucugggucgggguuucguacguagcagagcagcucccucgcug cgaucuauugagagucagcccucgacacaagcuuuugu |
.........................<<<<<<.....<......>...... >>>>>.>.........<<....>>..<<<<<<.....<<.....>>.... >>>>>>..[[[..<<<<<...<<<<<<<<<<.....>>>>>>.>>>>... ..>>>>>..<<<<<<<<<....<<<<<<<<.<<.....<<<<<<<<.... <<<<......>>>>.....((......<<<.....))>>>...>.>>>>> >>.>>>>>>>>>>...>>>>>>>>>.......<<<<<<<........>>> >>>>.....(((((..<<<<<<)))))..]]].................. ................<<....>>...............<<<......>> >..................................<<<<<<<<..<<<.< ......<<<<<<<<<<.....<<<<<<<<<....<<<<<<<<<<<..<<. ...<<<.<<<<<<.<<<........>>>.>>>>>>>>>...>>..>>>>> ...>>>>>>>>>>>>>>>......>>>>>>>.>>>.....<<<<<<<<<< <<<<<<<<<<<<<...<<.<<<<..<<<<<<<.......<<<<<<<<... ..........>>>>>>>>.......>>>>>>>>>>>......>>>>>>.. >>>>>>>>>>>..................<<<<<<<<<<<..>>>>><<< <<<..<<<<<<<.<<<<<<<<<<<....<<<<<<.<<<<....>>>>.>> >>>>...>>>>>>>>>>>..>>>>>>>.....>>>>.>>...>>>>>>.. ...>>>.>>>>>....>>>>...>>>>>>>>..<<<<........>>>>< <<<<<....<<<<<<<<<<<<<..<<<...<<<<........>>>>...> >>...<<....>>...<<<<<<<....>>>>>>>..<<<<<...<<<<<< <<.............>>>>>>>>....>>>>>.<<<<<<<<<.<<<<... ...>>>>>>>>>>>.>>....>>>>>>>>>>>>>..<<.<..<<<<<<<. ....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>.. .<<<..<<.<<........>>>>.>>>....>>>>>>>>>...<<..... ..>>......>>>>>>...>..>.>>..<<<<<<....<.<<<....>>> .><<.<<<<<<<...........<<<.<<<<<<<<<...<<<....<<<. .<.<<<..<<<<<<.........>>>>>>>>>.>..>>>..>.>>...>> >>>>>...<<<<<<<<<.<......>>>>>>>>>>.....>>>>>>>>>> >>..>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>. ..<<<<<<<...<<<(((.......<<<<<.....<<..........<<< .<<<<<<<<<<.......<<<<<.<<<...<<.........>>...>>>. ........<<......>>...>>>>>...>>>>>>>>>>>>>........ ..))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<......... .............>>>>>>>>>....>>>>>>...<<<<<<<<.<<.... ..<<<<<.<<<....>>>>>>>>...>>>>>>>>>>........>>>>>> <<.....<<.....<<<<<<.......>>>>>>.<<<.....<<<<..<< ...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<.....< <<....>>>..........<<.<<<<<<<<<...>>>>>>>>>>>..... ..>....>>>..<<<<<........>>>>>))<<<<....<<<<<...<< <<<<<....>>>>>>>...<<<....>>>...<..<<<<<<<...<<<<< <<<<<<<.<<<<<<<<<<..{{{..>>>>>>....<<<<<<<<<<.<<<< .....<<<.....>>>.....>>>>>>>>>.>>>>>.....<<<<<<<.. .....>>>>>>>>>>>...>>>>>>>>>>>>.........>>>>>>>..> ..........>>.>>>.>>>>.>>>..>>.....<<......>>.>>>>. <<<<.....>>>>..>>>....<<<<.....<<<<<<<.<<......... <.....<<<<<....<....>.....>>>>><<.<<<<<<<<<<<....> >>>>..>>>>>>.>>............<<<<<<<<<..<<<......... >>>..<<<<<<<....<<<<.....>>>>......>>>>>>>...<<..< <<..<<<<<<....<<<...<.<<<<....>>>>.>...>>>.>>>>..> >>>><<<<<<.......>>>>>>........<...........<<<<<.. .....>>>>>.....>.....>>....>>.>>>>>>>..>..>>.>>>>> >>..>>>>>>....>>....<<<<<........>>>>>....[[[[[..{ {{.{{......[[[[.{{[[[[..<<<<<.<<<<<<<<<.<<<<<<<<<< <<.<<<<..........<<<<<..<<<<..>>>>............>>>> >.>>>>.>>.>>>>>>>>>>...<<<<<.....<<<<..<<.<<<<<<.. ..>>>>>>>>..............<<<<<<<<<<..>>>>>>>>>>..>> >>..>>>>>....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<< <...........>>>>>>..<<...<<<<<<<...<<<<<<.......>> >>>>.....<<.[.(((>>....>>>>>>>...<<<..<<<<.......> >>>..>>><<<<....>>>>>>)))]......((((((.[.((..>>>>> >.))]))))))..........]]]]..}}]]]].......<<.<.<.<<< <<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<< <<<<..<.<.<<<<<......>>>>>...>.>.<<<.........>>>.. ...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}. .}}}.]]]]].....<<<<<<<<..<<<..<.<<<<<............. ....>>>>>.><<<<....<<<<....<<.<<<<<<<}}}.>>>>>..>> .>>...>>>>...>>>>.<<<<...<<<<<...........>>>>>...> >>>..>>>...>>>>>>>>.....<<<<<<<.<<..<<<<....<<<... .....<<<<<<<<<<..<<<....>>>..>>>>>>>>>>.......>>>. ..<<<<<<.<<<....<<<.<<<<............>>>>>>>..>>>.> >>>>>..............>>>>..>>>>>>>>><<<...<......... ....>....<<.<<<<<<<.<<<....<<<<.<..<<<<<......>>>> >..>>>>>...>>>....>>>>.>>>.>>....>>>.. |
|
|
|