Structure of PDB 6xyw Chain Bs Binding Site BS01

Receptor Information
>6xyw Chain Bs (length=66) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IRVKVFSNDLDKALTILQKKMQSSGMERLIKGTQTHHIKNSEKKVLARKN
LERRIKSIDFARKLQS
Ligand information
>6xyw Chain 2 (length=1743) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uagucaaaagaagaguuugauucuggcucagaaggaacgcuagcuauaug
cuuaacacaugcaagucgaacguuguucucggagcuaggcagcuccuagc
uccuugucucggggaagaguugagaacaaaguggcgaacgggugaguaag
gcgugggaaucugccgaacaguucgggccaaauccugaagaaagcuaaaa
agcgcuguuugaugagccugcguaguauuagguaguugguuagguaaagg
cugaccaagccaaugaugcuuagcuggucuuuucggaugaucagccacac
ugggacugagacacggcccggacucccacggggggcagcaguggggaauc
uuggacaaugggcgaaagccgauccagcaauaucgcgugagugaagaaag
gcaaugccgcuuguaaagcucuuucgucgagugcgcgaucaugacaggac
ucgaggaagaagccccggcuaacuccgugccagcagccgcgguaaaacgg
ggggggcaaguguucuucggaaugacugggcguaaagggcacguaggcgg
ugaaucggguugaaagugaaagucgccaaaaaguggcggaaugcuuucga
aaccaauucacuugagugagacagaggagaguggaauuucguguggaggg
gugaaaucuacagaucuacgaaggaacgccaaaagcgaaggcagcucucu
gggucccuaccgacgcuggggugcgaaagcauggggagcgaacgggauua
gauacccugguaguccaugccguaaacgaugaguguucgcccuuggucua
cgcagaucaggggcucagcuaacgcgugaacacuccgccuggggaguacg
gucgcaagaccaaaacucaaaggaauugacgggggccugcacaagcggug
gagcaugugguuuaauucgauacaacgcgcaaaaccuuaccagcccuuga
cauaugaacaacaaaaccuauccuuaacgggaugguacucacuuucauac
aggugcugcauggcugucgucagcucgugucgugagauguuuggucaagu
ccuauaacgagcgaaacccucgucuuguguugcucagacaugcgccuaag
gagaaaggcuugaaaaccgaagugagccaaggagccgagugaugugccag
accuagcuaggccaacucgacgucgcgacgucgaguuggcggcggagaaa
gacucggcauucaggcgagccgcccgguggugugggacgaaguaaguggg
uuuaguacgcccugccaaaacggcuccgaaacaaacaaaaaggugcgugc
cgcacucacgagggacugccagugauauacuggaggaagguggggaugac
gucaaguccgcauggcccuuaugggcugggccacacacgugcuacaaugg
caauuacaaugggaagcaaggcuguaaggcggagcgaauccggaaagauu
gccucaguucggauuguucucugcaacucgggaacaugaaguuggaaucg
cuaguaaucgcggaucagcaugccgcggugaauauguacccgggcccugu
acacaccgcccgucacacccugggaauugguuucgcccgaagcaucggaa
caaugaucacccaugacuucuguguaacacuagugccacaaaggcuuuug
guggucuuauuggcgcauaccacgguggggucuucgacuggggugaaguc
guaacaagguagccguaggggaaccuguggcuggauugaaucc
............<<<<..[.((((.>>>>.<<<<.<<<<<..<<.<<<<<
.....<<<.<<<..<<<..<<....<.<<<.<<<<<<<<.....>>>>>>
>><<<.<<<...>>>.>>>..>>>.>....>>>>>......<<.......
<<<<<<<..<<...<<<<<<<<<<<<<......>>>>>.....<<.....
.>>>>>>>>>>..>>.>>>>>>><<<....<<<...<<<<<<<.......
>>>>>>>.>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>.......
..<<<...<<<.......>>.>>>>..>>.>>>.>>..<<<<......<<
<<......>>>>.....>>>>...<.<<<<<<................>>
>>>>....>..<<<<<(((...<<<<<.....<<.)))>>.......>>>
>>>>>>>..>>>>>>>>>..........<<<((.....<<<<...<<<.<
<<<<<..<<<<<<<<<<.....<<<<<<.....>>>>>>...>>>>>>>.
.>>>.>>>>>>....<<<.<<<...<<<<<<<....<<<<<<<.<..<<<
......>>>.....>.>>>>>>>...........<<....>>.>>>>>>>
..>>>..>>>....>>>...>>>>....<<<<<<...<<...<<<<.<..
...>.>>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<<.
...>>>>>>>>>>>...<<..))>>....>>>>>>.>>>.<<<......<
<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<<..<<<<<.
.<<<<<<<<<<......<<........>>........<.<<<<<<<....
..<<<.<<..........<<<<<<....>>>>>>.........>>.>>>.
<<<.<<<..<<<<<<.......<<<<<<<<<....>>>....<<......
>>....>>>>>>.....<<<<.<<<<<.<(.<<.....<<<<<<<<....
.........................<<......<<<<<<<..<...<<..
....<..>.....<<<<<<<<<<<..>>>>>>>>>>>......>>...>.
.>>>>>>>......>>..................<<.<<....<<.....
>>.....>>.>>.............................>>>>>>>>.
.>>...>)>>>>>.....<<<<<<...>>>>>>........>>>>.....
....>>>...>>>>>>>>>...>>>>>>>>..>>.>>>>>>>>.....<<
<<<<<......<<..<<...<<<....>>>...>>....>>.....>>>>
>>>...........<<<<<<<........>>>>>>>..........>>>>
>.....<<<<<<<.........>>>>>>>......>>...>>>>>>>>>>
.>>....<..<<.<.<<<<<<<<.....<<<<<<<<<....<........
<<<<<<<<<.<......<...<.<............>.>....>.....>
.>>>>..>>>>>.......>...>>>>>>>>>.....>>>>>>>>..>.>
>...>.....<<<<<<<<<....>>>>>>>>>...........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xyw Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Resolution3.86 Å
Binding residue
(original residue number in PDB)		N66 S67 K70 K75 L77 R79 R80
Binding residue
(residue number reindexed from 1)		N40 S41 K44 K49 L51 R53 R54
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6xyw, PDBe:6xyw, PDBj:6xyw
PDBsum6xyw
PubMed32251374
UniProtF4JCI2

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