Structure of PDB 6z1p Chain Bq Binding Site BS01

Receptor Information
>6z1p Chain Bq (length=176) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSVWNLLNPIRNGATGLKLLSSGRELFGTVIQHGKMDKTVTVKVDYRYWY
PKTKEFKSKTSKYQVHDSENFCVTGDKVVIKSMLPISTMKHYYVRNIVKP
FPRDTYYKEGQEQLKKEYQRLYQEFYEREQQRTEIKNKKDEVTLKSALKA
KALTRAMANLRKVESTQKKKDKVVAA
Ligand information
>6z1p Chain Ab (length=2237) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaguaaauuucaauaaguuuuugaaauugaaaaauagagaucuaccucua
aaacuuguaaaguuuaaauucaauagaaaacaguaccgcgagggaaaggu
gaaaagauuuuauaauaucuuaaaagaaccugaaauuuagugcuaaauac
aguuaaagcuuuauuguuuuaacguaccuuuugcauaaugggcuagcgag
uuuauauaauuagcgaguaauuuaaauuuuauaaaauuacgaaucgauag
aauaaauaguuaauuauauaagacccgaagcuaagugaucuaauuaugau
uagauuaaggguauuuauaccugaggaucgaacucuuaaauguugcaaaa
uuuugggauaaauuguaauuaggggugaaaggcuuaucaaacuuaguuau
agcugguuuuccacgaaaccuauuuaaguaggguguuauuuuuuauaaua
auuagguuuaaauaacuauaucuauaauuaauuuguuaauuauaaaauua
guauauaauaauuaguuauuauuagauaauaaccagacuauuagcgcuaa
gguuuauagucaagagagaaacagcucagauuaaacaauaaggucuuuaa
aaauaaauaauuauggagauuauuuuuguuaauacuaauaagauguaggc
uuggaagcagccaucauuuuaaaaaagcguaaaagcuuaauauuagauaa
auuaauguuaaaaauuaauugauacuuaaauaaucauagaugaagagaga
auaauuuuuauuuaccgaauugauaaaucgaaagaugguaguggaacguu
uuguauaaaaaaauaaaauugugaaauuuuauauuuuaucaauauugaua
augcuagcaugaguaguagacauaaugugagaaucauuaucgccugauau
acaaggguuacuaaauuugauaaucuuauuuaguguaagucgauuucuaa
gauauaaaaguauauuguuaucaaugaauauaaaauauaaaauaucuaau
aaacuacuuuuuauauuauauaaaauuuuuuauaauauaggugguuuagu
gacuggaaauguuuauauuuuauuaaaucguacuaacucuaacacaagug
uuuaaguagaauauauaauggcgaaggaguaaaaaguauugaaggaacua
ggcaaaauaacccuguaacuuugggagaaagggggcuuuuaagcaacuga
aaagagagaguagcgacuguuuaauaaaaacauaagauuuugcaaaauuu
aaauaugauguauaaaaucugacaccugcccggugcugcaaggugaaucu
auuuuaguuaacgcugaaauauuaaaccccaguaaacggcggccguaacc
cugacgguccuaagguagcaaaauuccuuggcggguaaguuccguccugc
augaaugguguaacgacugcucugcugucuccaauacuugcucuacgaaa
uugaacuuuccgugaagaugcggcaauauuacaacuagacgggaagaccc
uaugcaccuuuacuguuaucuguaauuaauuuaauuacauauaaauaaaa
uaaauuuuaauuauuuuuguuauugaaagacaguuugacuggggcggucu
ccuccuaaaaaguaacggaggaguauaauaauuugggguaucuuauuuua
auugagaucaauauuagaaugaauauacuaaauuugauuagaguacaaac
aaguauucuaaggauauaugucugucauauugacccgauauaauuuagua
gaaaauauaucgaucaacgaauaaaagguacgcuagggauaacaggcuua
uggguuuugagaguucuuauuaauaaacccguuuggcaccucgaugucgg
cucaucacauccugaugguggacaaucuaucaaggguccggcuguucgcc
gguuaaagugguacgugagcuggguuuaaaacgucgugagacaguuuggu
cccuaucuguuguaauuacaagaaaauaaauaagaauuaacuuuaguacg
agaggacuaggaaaauuuaaucacugguuugaaaauuacuuuaauaaaua
aaaguacgguuuuuaagcuaaauuaaacaagauaauugcugaauucuaua
uaagcaagaaucuaacuuauauuauuuucuaauaaacuuuuuaaagacua
uauuauuuaaguauauuuauuaagagucauuauaacuaauaaauauaaau
auacuaaauguuuaauaaucacuacaguuuaguuuuu
.....<<<<<<<<.......>>>>>>>>......<<<<<..((((>>>>>
...................................<<....>>.......
..................................................
.<<<<<<<<......>>>>>>>>...<.<........>.>.<<<<<<...
.<<<<<<<<<<<<...<<<..................>>>...<<....>
>........>>>>>>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<
..<<<...<<<<<<..>>>>>>....>>>...<<<..<<<<........>
>>>.>>>....>>>>>>>>>...<<<.....>>>......>>>>>>....
..>.>>..<<<<<<....<<<<<....>>>>><<<<<<<<....<<<<<<
<<<.....<..<<.<<<<..<..<<<<<<<<....>>>>>>>>..>..>>
>>..>>.>.....>>>>>>>>>..>>>>>>.>>..<<<<<<.<<<.....
.>>>.>>>>>>....<<<......>>>...<<<..<<<...<<<(((...
<<<<<<<..........<<<<<<<<....<<...<<<<<<..<<<..<<<
<.......>>>>..>>>.......<<<<......>>>>..>>>>>>...<
<<<<...........>>>>>..>>...>>>>>>>>...........))).
......>>>>>>>>>>...>>>.>>><<<....>>>....>>>>>><<..
<<<...<<....<<<<<<<<....>>>>>>>>...>>..>>>...>>...
..>>>>>><......<<....<<<<<<.......>>>>>><<<<....<.
<<..<....<<<<<<.............>>>>>>.......<<<.<<...
<<<....<<.....>>...>>>...>>....<<<<<<<<<<...<<...<
<<<<<<<.....<<<<<<<<....[[.[[.>>>>>>>>..>>>>>>>>..
>>.........>>>>>>>>>>.....>>>....>....<<......>>.>
>.>..<<<.....>>>...>>>>..<<<<<...<<<<<<<..<<......
..........<<<<...............>>>>.<<......>>......
......<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<..
....>>.......>>>>>>>.<<<<<.<<<..<<<<<<...<<<.....<
<<<<<<<<....>>>>>>>>>....>>>.>>>>..>>>>><<<<<<....
...>>>>>>........<...........<<<<<.......>>>>>....
.>....>>>>>..>>.>>>>>>>.....>>..>>>>>>>>>>>>>>....
.>.....<.<<<........>>>.>..<<<<<<<<.<<<.<<<.....<<
<<.<.<<<<..<<<<...<<.<<<<<<<<<<.>>>>>.<.<<<<......
..........>>>>.>..>>>>>.>>....>>>>..<<<<.....>>>><
<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<.....
..>>>>>>....<<<...(((>>>...>>>>>>>...<<<<<<<<<....
..>>>>>>>>>.<<<....>>>.>>))).......<<<<<<.<<<..)))
)..>>>>>>>>>.............>>>>...>>>>>.......<<<<..
.<<<<<<...<<.......>>...>>>>>>....>>>.>.......<.<<
<.<<<<<<..<<<<<<<<........>>>>>>..>>.<<<<<.....>>>
>>.....>>>>>..>...>>>..>....<<<<<<<....>>>.>>>>...
>>>..>>>>>>>>>>>....<<<<<<<<.<<<<<.<<<..<<<.......
........>>>..>>><<<<<....<<<..<<<<<<<<<<<<...]]]].
>>>>>>..>>>>>>..>>>..>>>>>...<<<...<<<<<..........
..>>>>>...>>>..>>>>>..>>>>>>>>...<<<<.<..<<.......
>>..>....<<<<<<<<<<<.........<.......>......>>>>>>
>>>>>....>>>>........................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z1p Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)
R139 K158 K177
Binding residue
(residue number reindexed from 1)
R132 K151 K170
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6z1p, PDBe:6z1p, PDBj:6z1p
PDBsum6z1p
PubMed32553108
UniProtI7M6C7

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