Structure of PDB 8q87 Chain Bp Binding Site BS01

Receptor Information
>8q87 Chain Bp (length=91) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKA
VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Ligand information
>8q87 Chain B5 (length=3638) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgccggauccccgccuccgccgggcgggccggggaccgccgcccggccgg
cguccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccg
gcuccgggacggcugggaagggcugccggcgggcagguggcccggcgccg
cgcgagcggccgccggguguuauagccgccgggcccggaucgucgccgaa
ucccggggccgagggagaggaccgccgccgcgcccucccccgggggacgg
gcccgccggcccccggcgccgcuguccgggggcggacugcgcucagugcg
ccccgaccggcggcgccgccgggccgggcucgggccacgccagggcgccc
gggguccgcggcgacgucggcuacccacccgacccgucuugaaacacgga
ccaaggagucuagcacgcgcgcgagucggcggcucgcgcgaaagcccgcg
gcgcaaugaaggugagggccggcgcgcgccggcugaggugggaucccggg
gcggcaggccggaaggccccgggcgcaccaccggcccgucucgcccgccu
cgccggggagguggagcaugagcgcgcgugcuaggacccgaaagauggug
aacuaugccugggcagggcgaagccagaggaaacucugguggagguccgu
agcgguccugacgugcaaaucggucguccgacccggguauaggggcgaaa
gacuaaucgaaccaucuaguagcugguucccuccgaaguuucccucagga
uagcuggcgcucggggcggcggugcaguuuuacccgguaaagcgaaugau
uagaggucuuggggccgaaacgaucucaaccuauucucaaacuuucaaug
gguaagacgcccggcucgcuggcguggagccgggccguggaaugcgagcg
cucagugggccacuuuugguaagcagaacuggcgcugcgggaugaaccga
acgccggguuaaggcgcccgaugccgacgcucaucagagcccagaaaagg
uguugguugaucuagacagcaggacgguggccauggaagucggaacccgc
uaaggaguguguaacaacucaccugccgaaucaacuagcccugaaaaugg
auggcgcuggagcgucgggcccauacccggccgucgccggcggugcggag
ccgcgggggcuacgccgcgacgaguaggagggccgcugcggugcgccugg
aagccuggggcgcgggcccggguggagccgccgcaggugcagaucuuggu
gguaguagcaacuauucaaacgagagcuuugaaggccgaaguggagcagg
guuccaugugaacagcaguugaacaugggucagucgguccuaagcgauag
gcgagcgccguuccgaagggacgggcgauggccuccguugcccucagccg
aucgaaagggagucggguucagauccccgaauccggagcggcggagacgg
gcgccgcgaggcgcccagugcgguaacgcaagcgaucccggagaagccgg
cgggagccccggggagaguucucuuuucuuugugaagggccgggcgcccu
ggaacggguucgccccgagagaggggcccgcgccuuggaaagcgucgcgg
uuccggcggcguccggugagcucucgcuggcccgugaaaauccgggggag
aggguguaaaucucgcgccgggccguacccauauccgcagcaggucucca
aggugaacagccucuggcauguuggaccaauguagguaagggaagucggc
aagccggauccguaacuucgggauaaggauuggcucuaagggcugguagc
agccggcuuagaacuggugcggaccaggggaauccgacuguuuaauuaaa
acaaagcaucgcgaaggcccgcggcggguguugacgcgaugugauuucug
cccagugcucugaaugucaaagugaagaaauucaaugaagcgcggguaaa
cggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucu
aauuagugacgcgcaugaauggaugaacgagauucccacugucccuaucu
acuauccagcgaaaccacagccaagggaacgggcuuggcggaaucagcgg
ggaaagaagacccuguugagcuugacucuagucuggcgcugugaagagac
augagagguguagaauaagugggaggccccggccgccggugaaauaccac
uacucugaucguuuuuucacuuacccggugaggcgggggggcgagccccg
aggggcucucgcuucuggcgccaagcgcccggcgcgcgccgggcgcgacc
cgcuccggggacagcgucagguggggaguuugacuggggcgguacaccug
ucaaagcguaacgcagguguccuaaggcgagcucagggaggccagaaacc
ucccguggagcagaagggcaaaagcucgcuugaucuugauuuucaguacg
aauacagaccgugaaagcggggccucacgauccuucugacuuuuuggguu
uuaagcaggaggugucagaaaaguuaccacagggauaacuggcuuguggc
ggccaagcguucauagcgacgucgcuuuuugauccuucgaugucggcucu
uccuaucauugugaagcagaauucaccaagcguuggauuguucacccacu
aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua
cccuacugaugauguguuguugcgcuaguaauccugcucaguacgagagg
aaccgcagguucagacauuugguguaugugcuuggcugaggagccacugg
agcgaggcuaccaucugugggauuaugacugaacgccucuaagucagaau
ccccccuaaacguagcgauaccgcagcgccgaggcgccucggugggcucg
cgauagccggccgccgccccccucgggcgggcggucggugcggagcgccg
cucguggucgggaccggagcgcggacagauguggcgccgccucucccccg
ccgcguaccgcauguucguggggaacccggugcuaaaucauucguagacg
accugauucugggucgggguuucguacguagcagagcagcucccucgcug
cgaucuauugagagucagcccucgacacaagcuuuugu
.........................<<<<<<.....<......>......
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>>>>>>..[[[..<<<<<...<<<<<<<<<<.....>>>>>>.>>>>...
..>>>>>..<<<<<<<<<....<<<<<<<<.<<.....<<<<<<<<....
<<<<......>>>>.....((......<<<.....))>>>...>.>>>>>
>>.>>>>>>>>>>...>>>>>>>>>.......<<<<<<<........>>>
>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<......>>
>..................................<<<<<<<<..<<<.<
......<<<<<<<<<<.....<<<<<<<<<....<<<<<<<<<<<..<<.
...<<<.<<<<<<.<<<........>>>.>>>>>>>>>...>>..>>>>>
...>>>>>>>>>>>>>>>......>>>>>>>.>>>.....<<<<<<<<<<
<<<<<<<<<<<<<...<<.<<<<..<<<<<<<.......<<<<<<<<...
..........>>>>>>>>.......>>>>>>>>>>>......>>>>>>..
>>>>>>>>>>>..................<<<<<<<<<<<..>>>>><<<
<<<..<<<<<<<.<<<<<<<<<<<....<<<<<<.<<<<....>>>>.>>
>>>>...>>>>>>>>>>>..>>>>>>>.....>>>>.>>...>>>>>>..
...>>>.>>>>>....>>>>...>>>>>>>>..<<<<........>>>><
<<<<<....<<<<<<<<<<<<<..<<<...<<<<........>>>>...>
>>...<<....>>...<<<<<<<....>>>>>>>..<<<<<...<<<<<<
<<.............>>>>>>>>....>>>>>.<<<<<<<<<.<<<<...
...>>>>>>>>>>>.>>....>>>>>>>>>>>>>..<<.<..<<<<<<<.
....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>..
.<<<..<<.<<........>>>>.>>>....>>>>>>>>>...<<.....
..>>......>>>>>>...>..>.>>..<<<<<<....<.<<<....>>>
.><<.<<<<<<<...........<<<.<<<<<<<<<...<<<....<<<.
.<.<<<..<<<<<<.........>>>>>>>>>.>..>>>..>.>>...>>
>>>>>...<<<<<<<<<.<......>>>>>>>>>>.....>>>>>>>>>>
>>..>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>.
..<<<<<<<...<<<(((.......<<<<<.....<<..........<<<
.<<<<<<<<<<.......<<<<<.<<<...<<.........>>...>>>.
........<<......>>...>>>>>...>>>>>>>>>>>>>........
..))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<.........
.............>>>>>>>>>....>>>>>>...<<<<<<<<.<<....
..<<<<<.<<<....>>>>>>>>...>>>>>>>>>>........>>>>>>
<<.....<<.....<<<<<<.......>>>>>>.<<<.....<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<.....<
<<....>>>..........<<.<<<<<<<<<...>>>>>>>>>>>.....
..>....>>>..<<<<<........>>>>>))<<<<....<<<<<...<<
<<<<<....>>>>>>>...<<<....>>>...<..<<<<<<<...<<<<<
<<<<<<<.<<<<<<<<<<..{{{..>>>>>>....<<<<<<<<<<.<<<<
.....<<<.....>>>.....>>>>>>>>>.>>>>>.....<<<<<<<..
.....>>>>>>>>>>>...>>>>>>>>>>>>.........>>>>>>>..>
..........>>.>>>.>>>>.>>>..>>.....<<......>>.>>>>.
<<<<.....>>>>..>>>....<<<<.....<<<<<<<.<<.........
<.....<<<<<....<....>.....>>>>><<.<<<<<<<<<<<....>
>>>>..>>>>>>.>>............<<<<<<<<<..<<<.........
>>>..<<<<<<<....<<<<.....>>>>......>>>>>>>...<<..<
<<..<<<<<<....<<<...<.<<<<....>>>>.>...>>>.>>>>..>
>>>><<<<<<.......>>>>>>........<...........<<<<<..
.....>>>>>.....>.....>>....>>.>>>>>>>..>..>>.>>>>>
>>..>>>>>>....>>....<<<<<........>>>>>....[[[[[..{
{{.{{......[[[[.{{[[[[..<<<<<.<<<<<<<<<.<<<<<<<<<<
<<.<<<<..........<<<<<..<<<<..>>>>............>>>>
>.>>>>.>>.>>>>>>>>>>...<<<<<.....<<<<..<<.<<<<<<..
..>>>>>>>>..............<<<<<<<<<<..>>>>>>>>>>..>>
>>..>>>>>....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<<
<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>
>>>>.....<<.[.(((>>....>>>>>>>...<<<..<<<<.......>
>>>..>>><<<<....>>>>>>)))]......((((((.[.((..>>>>>
>.))]))))))..........]]]]..}}]]]].......<<.<.<.<<<
<<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<
<<<<..<.<.<<<<<......>>>>>...>.>.<<<.........>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}.
.}}}.]]]]].....<<<<<<<<..<<<..<.<<<<<.............
....>>>>>.><<<<....<<<<....<<.<<<<<<<}}}.>>>>>..>>
.>>...>>>>...>>>>.<<<<...<<<<<...........>>>>>...>
>>>..>>>...>>>>>>>>.....<<<<<<<.<<..<<<<....<<<...
.....<<<<<<<<<<..<<<....>>>..>>>>>>>>>>.......>>>.
..<<<<<<.<<<....<<<.<<<<............>>>>>>>..>>>.>
>>>>>..............>>>>..>>>>>>>>><<<...<.........
....>....<<.<<<<<<<.<<<....<<<<.<..<<<<<......>>>>
>..>>>>>...>>>....>>>>.>>>.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
A2 R4 T5 K6 K7 V8 G9 I10 G12 K13 Y14 G15 T16 R17 Y18 G19 A20 S21 L22 R23 Q33 H34 F41 C42 K44 K46 R49 A51 G58 S59 M61 K62 W69
Binding residue
(residue number reindexed from 1)
A1 R3 T4 K5 K6 V7 G8 I9 G11 K12 Y13 G14 T15 R16 Y17 G18 A19 S20 L21 R22 Q32 H33 F40 C41 K43 K45 R48 A50 G57 S58 M60 K61 W68
External links
PDB RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum8q87
PubMed
UniProtP32046|RL37A_CHICK Large ribosomal subunit protein eL43 (Gene Name=RPL37A)

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