Structure of PDB 8q7z Chain Bp Binding Site BS01

Receptor Information
>8q7z Chain Bp (length=91) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKA
VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Ligand information
>8q7z Chain B5 (length=3562) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgcggauccccgccuccgccgggcgggccggggaccgccgcccggccggc
guccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccgg
cuccgggacggcugggaagggcugccggcgggcagguggcccgggccggg
uguuauagccgccgggcccggaucgucgccgaaucccggggccgagggag
aggaccgccgccgcgcccucccucgggggacgggcccgccggcccccggc
gccgcuguccggggcggacugcgcucagugcgccccgaccggcggcgccg
ccgggccgggcucgggccacgccagggcgcccgggguccgcggcgacguc
ggcuacccacccgacccgucuugaaacacggaccaaggagucuagcacgc
gcgcgagucggcggcucgcgcgaaagcccgcggcgcaaugaaggugaggg
ccggcgcgcgccggcugaggugggaucccggggcggcaggccggaaggcc
ccgggcgcaccaccggcccgucucgcccgccucgccggggagguggagca
ugagcgcgcgugcuaggacccgaaagauggugaacuaugccugggcaggg
cgaagccagaggaaacucugguggagguccguagcgguccugacgugcaa
aucggucguccgacccggguauaggggcgaaagacuaaucgaaccaucua
guagcugguucccuccgaaguuucccucaggauagcuggcgcucggggcg
gcggugcaguuuuacccgguaaagcgaaugauuagaggucuuggggccga
aacgaucucaaccuauucucaaacuuucaauggguaagacgcccggcucg
cuggcguggagccgggccguggaaugcgagcgcucagugggccacuuuug
guaagcagaacuggcgcugcgggaugaaccgaacgccggguuaaggcgcc
cgaugccgacgcucaucagagcccagaaaagguguugguugaucuagaca
gcgccgaaucaacuagcccugaaaauggauggcgcuggagcgucgggccc
auacccggccgucgccggcggugcggagccgcgggggcuacgccgcgacg
aguaggagggccgcugcggugcgccuggaagccuggggcgcgggcccggg
uggagccgccgcaggugcagaucuuggugguaguagcaacuauucaaacg
agagcuuugaaggccgaaguggagcaggguuccaugugaacagcaguuga
acaugggucagucgguccuaagcgauaggcgagcgccguuccgaagggac
gggcgauggccuccguugcccucagccgaucgaaagggagucggguucag
auccccgaauccggagcggcggagacgggcgccgcgaggcgcccagugcg
guaacgcaagcgaucccggagaagccggcgggagccccggggagaguucu
cuuuucuuugugaagggccgggcgcccuggaacggguucgccccgagaga
ggggcccgcgccuuggaaagcgucgcgguuccggcggcguccggugagcu
cucgcuggcccgugaaaauccgggggagaggguguaaaucucgcgccggg
ccguacccauauccgcagcaggucuccaaggugaacagccucuggcaugu
uggaccaauguagguaagggaagucggcaagccggauccguaacuucggg
auaaggauuggcucuaagggcugguagcagccggcuuagaacuggugcgg
accaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcccgc
ggcggguguugacgcgaugugauuucugcccagugcucugaaugucaaag
ugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugacucu
cuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugg
augaacgagauucccacugucccuaucuacuauccagcgaaaccacagcc
aagggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcu
ugacucuagucuggcgcugugaagagacaugagagguguagaauaagugg
gaggccccggccgccggugaaauaccacuacucugaucguuuuuucacuu
acccggugaggcgggggggcgagccccgaggggcucucgcuucuggcgcc
aagcgcccggcgcgcgccgggcgcgacccgcuccggggacagcgucaggu
ggggaguuugacuggggcgguacaccugucaaagcguaacgcaggugucc
uaaggcgagcucagggaggccagaaaccucccguggagcagaagggcaaa
agcucgcuugaucuugauuuucaguacgaauacagaccgugaaagcgggg
ccucacgauccuucugacuuuuuggguuuuaagcaggaggugucagaaaa
guuaccacagggauaacuggcuuguggcggccaagcguucauagcgacgu
cgcuuuuugauccuucgaugucggcucuuccuaucauugugaagcagaau
ucaccaagcguuggauuguucacccacuaauagggaacgugagcuggguu
uagaccgucgugagacagguuaguuuuacccuacugaugauguguuguug
cgcuaguaauccugcucaguacgagaggaaccgcagguucagacauuugg
uguaugugcuuggcugaggagccacuggagcgaggcuaccaucuguggga
uuaugacugaacgccucuaagucagaauccccccuaaacguagcgauacc
gcagcgccgaggcgccucggugggcucgcgauagccggccgccgcccccc
ucgggcgggcggucggugcggagcgccgcucguggucgggaccggagcgc
ggacagauguggcgccgccucucccccgccgcguaccgcauguucguggg
gaacccggugcuaaaucauucguagacgaccugauucugggucgggguuu
cguacguagcagagcagcucgcugcgaucuauugagagucagcccucgac
acaagcuuuugu
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>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<<....>>>
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............<<<<<<<<<......>>><<<<<<..<<<<<<<.<<<<
<<<<<<<..<<<<<<<.<<<<....>>>>.>>>>>>>..>>>>>>>>>>>
..>>>>>>>.....>>>>.>>...>>>>>>.....>>>.>>>>>....>>
>>...>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<...<<<<........>>>>...>>>...<<....>>...<<
<<<<<....>>>>>>>..<<<<<...<<<<<<<<.............>>>
>>>>>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.
...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<
....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<.......
.>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>..
.>..>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......
.....<<<.<<<<<<<<<...<<<....<<<..<.<<<..<<<<<<....
.....>>>>>>>>>.>..>>>..>.>>...>>>>>>>...<<<<<<<<<.
<......>>>>>>>>>>.....>>>>>>>>>>>>..>>..<<<<.<<<<<
.....>>>>>.>>>>....<<<......>>>...<<<<<<<...<<<(((
.......<<<<<.....<<..........<<<.<<<<<<<<<<.......
<..>...>>>>>>>>>>>>>..........))).>>...>>>>>..>>>.
..>>>>>>><<<<<<.<<<......................>>>>>>>>>
....>>>>>>...<<<<<<<<.<<......<<<<<.<<<....>>>>>>>
>...>>>>>>>>>>........>>>>>><<.....<<.....<<<<<<..
.....>>>>>>.<<<.....<<<<..<<...<<<<<<...<<.....>>.
>>>>>>....((<<<<<<...<.....<<<....>>>..........<<.
<<<<<<<<<...>>>>>>>>>>>.......>....>>>..<<<<<.....
...>>>>>))<<<<....<<<<<...<<<<<<<....>>>>>>>...<<<
....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..{{
{..>>>>>>....<<<<<<<<<<.<<<<.....<<<.....>>>.....>
>>>>>>>>.>>>>>.....<<<<<<<.......>>>>>>>>>>>...>>>
>>>>>>>>>.........>>>>>>>..>..........>>.>>>.>>>>.
>>>..>>.....<<......>>.>>>>.<<<<.....>>>>..>>>....
<<<<.....<<<<<<<.<<...............<<<<<....<<..>>.
....>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>.......
.....<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<..
...>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<...<.
<<<<....>>>>.>...>>>.>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<.......>>>>>.....>.....>
>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<
<<<........>>>>>....[[[[[..{{{.{{......[[[[.{{[[[[
..<<<<<.<<<<<<<<<.<<<<<<<<<<...<<<<..........<<<<<
..<<<<..>>>>............>>>>>.>>>>....>>>>>>>>>>..
.<<<<<.....<<<<..<<.<<<<<<<..>>>>>>>>>............
..<<<<<<<<<<..>>>>>>>>>>..>>>>..>>>>>....>>>>>>>>>
..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<
...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>...
.>>>>>>>...<<<..<<<<.......>>>>..>>><<<<....>>>>>>
)))]......((((((..(((..>>>>>>.)))))))))..........]
]]]..}}]]]].......<<.<.<.<<<<<<...<<.......>>...>>
>>>>...>>.>.>.......<<<<<.<<<<<<..<.<.<<<<<......>
>>>>...>.>.<<<.........>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....}}..}}}.]]]]].....<<<<<<<
<..<<<..<.<<<<<.................>>>>>.><<<<....<<<
<...<<<.<<<<<<<}}}.>>>>>..>>.>>>..>>>>...>>>>.<<<<
...<<<<<...........>>>>>...>>>>..>>>...>>>>>>>>...
..<<<<<<<.<<..<<<<....<<<........<<<<<<<<<<..<<<..
..>>>..>>>>>>>>>>.......>>>...<<<<<<.<<<....<<<.<<
<<............>>>>>>>..>>>.>>>>>>..............>>>
>..>>>>>>>>><<<...<.............>....<<.<<<<<<<.<<
<....<<<<.<..<<<<<..>>>>>..>>>>>...>>>....>>>>.>>>
.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
A2 K3 R4 T5 K6 K7 V8 G9 I10 G12 K13 Y14 G15 T16 R17 Y18 G19 A20 S21 L22 R23 H34 F41 C42 K44 K46 R49 G58 M61 K62 W69
Binding residue
(residue number reindexed from 1)
A1 K2 R3 T4 K5 K6 V7 G8 I9 G11 K12 Y13 G14 T15 R16 Y17 G18 A19 S20 L21 R22 H33 F40 C41 K43 K45 R48 G57 M60 K61 W68
External links
PDB RCSB:8q7z, PDBe:8q7z, PDBj:8q7z
PDBsum8q7z
PubMed
UniProtP32046|RL37A_CHICK Large ribosomal subunit protein eL43 (Gene Name=RPL37A)

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