Structure of PDB 4v5z Chain Bn Binding Site BS01

Receptor Information
>4v5z Chain Bn (length=236) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL
NRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF
GALKGAVDGGLSIPHSTKRFPGYDSESKEFAEVHRKHIMGQNVADYMRYL
MEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAI
Ligand information
>4v5z Chain B0 (length=2407) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agacguggcgacccgcugaauuuaagcauauuagucagcggaggaaaaga
aacuaaccaggauucccucaguaacggcgagugaacagggaagagcccag
cgccgaauccggacauggcguaggagucggguugcugggaagcagcccaa
agcggguggaaacuccaucuaaggcuaaauaccgcacgagaccgauaguc
aacaaguaccguaagggaaaguugaaaagaacuuugaagagagaguucaa
gagggcgugaaaccguuaagagguaaacggguggggucgcaguccgcccg
gaggauucaacccggcgucgcgagcguccaguaagacucacgggaaaccc
acccgacccgucuugaacacggaccaaggagucuaacacgugcgcgaguc
gggggcuacgaaagccgguggcgcaaugaaggugaagcacgagcgcacgu
guuaggacccgaaagauggugaacuaugccugggcagggcgaagccagag
gaaacucugguggagguccguagcggucugacgugcaaaucggucguccg
accuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucc
cuccgaaguuucccucaggauagcuggcgcucguuuuauccgguaaagcg
aaugauuagaggucuugauccaccuauucucaaacuuuaaaugguaagaa
ugcagugccuagugggccacuuuugguaagcagaacuggcgcugcgggau
gaccgaacgccggguuaaggcgcccgaugcgacgcucaucagaccccaga
aaagguguugguugauauagacagcaggacgguggccauggaagucggaa
uccgcuaaggaguguguaacaacucaccugccgaaucaacuagcccugaa
aaugguggcgcuggagcgucgggcccauacccggccgucccggccgcgac
gaguaggagggcgcugcggagccuugaagccagggcgcgggcccgggugg
gccgccgcaggugcagaucuuggugguaguagcaaauauucaaacgagaa
cuuugaaggccgaauggagaaggguuccaugugaacgcaguugaacaugg
gucagucgguccugagagauggccgucgaaagggagucggguucagaucc
ccgaauccgagucggagaagccgggagcuuugugaagggcggcccugaug
gguucgccccggagagggcccgugccuuggaaccgguagcucuggccuug
aaaaucguucgcgccgggccguacccauaucggcagcaggucuccaaggg
aacagccuggcauguuggaacaauguagguaagggaagucggcaagccgg
auccguaacuucgggauaaggauuggcucguagaacuggucggaccaggg
gaauccgacuguuuaauuaaaacaaagcaucgcgaaggccccggcgggug
uugacgcgaugugauuucugcccagugcucgaaugucaaagugaagaaau
ucaaugaagcgcggguaaacggcgggaguaacuaugacucucuuaaggua
gccaaaugccucgucaucuaauuagugacgcgcaugaauggaugaacgag
auucccacugucccuaccuacuauccagcgaaaccacagccaagggaacg
ggcuuggcggaaucagcggggaaagaagacccuguugagcuugacucuag
ucuggcacggugagagacaugagagguguagaauaagugggaggcccggc
cgccggugaaaaccacuacucugauguuuuucacugacggacagugccag
guggggaguuugacuggggcgguacaccugucaaacgguaacgcaggugu
ccuaaggcgagcucagggaggaccucccguggagcagaagggcaaaagcu
cgcuugaucuugauuuucguacgaauacagaccgugaaagcggggccuca
cgauccuucugcuuuuggguuuuaagcaggaggugucagaaaaguuacca
cagggauaacuggcuuguggcggccaagcguucauagcgacgucgcuuuu
ugauccuucgaugucggcucuuccuaucauugugaagcagaauucgccaa
gcguuggauuucacccacuaauagggaacgugagcuggguagaccgucgu
gagacagguuaguuuuacccuacugaugauguguugccaugguaauccug
cucaguacgagaggaaccgcagguucagacauuugguguaugugcuuggc
gagggccaauggggcgaagcuacaucugugggauuaugacugaacgccuc
uaagucagaaucccgcccaggcgacgauaaaccauucguagacgaccugc
uucuggugggguuucguacguagagagaucuauugaaaguccccuaccaa
ggguuug
.........(<<<<<<<<...[<<....>>.>.<[)>>>>>..>......
..<<....>>..<<<<<<<..[.<<.....>>>..>>>>>>>.......<
.<<....<<<>>>....>>.......<.<<<<<<<......>>>>>>>..
...<<<<<.((((((>>>>>...>>....................{.(>.
..)...<.<<....>>...>...<<......<<<<....>>>>..>>..{
...........................<<<<<<<<.<.....<..<..<.
...{{<((.(<.<<...).{>>.>.....>....>...>.....>.>>>>
>>>>>..<<<<...<...>>>>..<<<<....<<<<<<<<<<<<....<<
...<<<<.....>>>>...>>....]<....>...........>>>>>>>
>>>>>].<<.<..(<<<<<<....<<<<<<<<<<..<<<<(..<<<<<<<
....>>>>>>>...>.>>>...<<<<<[<............>>>>>>.).
.>>>>>>>>>>...<...<.].>).....]>>>>>>.......>>>><..
....(...[.<<<....>>>..(.<(<..<<..<<<.<(....<.<<...
<..<<<.<<..<........>..>>>>>.>.....>>...>>[).>>>..
...>>>>)..>.).......<.<<....>>..>...]..)].<<..<<..
...>>..<<<<...}...[{{..{.))..................>><..
...<<<<<<.<<.........<<<.......<.(................
>.........<<<<..)..>.>>>...>>>....>>.>>.>.>>>.>...
.....]}}..........}........}.}.>>.<<<<(.<.>..>>>..
>........).....<<<<....}.....(..(>>......)..).....
.>>>>.....}.......>>>><<<<<..[.......<(..<.......[
.>.>)....{....{<<<{............]..<.....><....>.<<
..}.<....<....<......<>..>......>.....<<....}..(>>
>....<.<<.<..<(....<...<<.....[<(..<<<....<.....(<
<)....>>....[..>........>>>>..)........>>>].......
....>...)>.>>..)>.>>....................>>>....]..
......[.........((....(.((.[...{<<......(....<....
.<<.........(>.....>......<<...>>.......>........<
<<<<<<<..).......>..{.....<<<<<<<<...<<<<....>>>>.
.>...>>>>>>>....<.<<<<..<<<<<<<..<<<....<<<<<....>
>>>.>...>>>>>>>>>..>>>>.<<<<.........>>>>.........
<...(.{.<...<<<<<....)..>>>>>>....>....>>.....>>.>
>>>>>...).>>...)]...)).).)<>>.....>>>.<<<<<<[.....
..>>>>>>...<<<<<..<<<........{<<<<<<[.[.[.<<<<<<.<
<<<<<<<<.<<<.<<<<<<<.<(.<(.......(..<<<...........
........)...)>>>..>>)..>>>>>>>.>>>...<>....>>>>>>>
>>..>>>>>.>.<<<[....>>>.(<<<<<<......)..>..>>>>>.<
.....<<<<<<<...<<<<<<.>>>>>>.....<<...(((>>....>>>
>>>>...<<<.<<<<.......[>>>.>>>><<<<....>>>>.>)))..
....<<<<<<<<<<..)))))).>>>>>>>>>>]..]...>>].]]....
>>>>.......<<.<...<<<<<<...<<.......>>...>>>>>>...
.>..>>]>....}<.<(.<.<<<<...<.<(<<<<.<..)..>>>>>...
>.>)<<<.......>>>......>>>>.(...>).>.><..<<<.<<<..
..>>>}.>>>..}.>....>>.>>>>>....<<<<<.<.<<<..<.<<<<
<.................>>>>>>.<<<<...}.<<<...<<<.<<<<<<
....>>>>>..]}>>>..>>>...>>>><<<<<...<<<<<.........
..>>>>>...>>>>>.>>>>.>>>>>..<<<<<.>..<<..]..>.>...
...<<<<<<<<<<......<<<<<..>.>>>>>...>>...>>>>>>>>.
.>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5z Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
Resolution8.7 Å
Binding residue
(original residue number in PDB)		R22 Y30 R34 I37
Binding residue
(residue number reindexed from 1)		R13 Y21 R25 I28
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 01:46:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v5z', asym_id = 'Bn', bs = 'BS01', title = 'Structure of the Mammalian 80S Ribosome at 8.7 A Resolution'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v5z', asym_id='Bn', bs='BS01', title='Structure of the Mammalian 80S Ribosome at 8.7 A Resolution')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0008097', uniprot = '', pdbid = '4v5z', asym_id = 'Bn'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0008097', uniprot='', pdbid='4v5z', asym_id='Bn')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>