Structure of PDB 8q7z Chain Bm Binding Site BS01

Receptor Information
>8q7z Chain Bm (length=52) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKK
VK
Ligand information
>8q7z Chain B5 (length=3562) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgcggauccccgccuccgccgggcgggccggggaccgccgcccggccggc
guccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccgg
cuccgggacggcugggaagggcugccggcgggcagguggcccgggccggg
uguuauagccgccgggcccggaucgucgccgaaucccggggccgagggag
aggaccgccgccgcgcccucccucgggggacgggcccgccggcccccggc
gccgcuguccggggcggacugcgcucagugcgccccgaccggcggcgccg
ccgggccgggcucgggccacgccagggcgcccgggguccgcggcgacguc
ggcuacccacccgacccgucuugaaacacggaccaaggagucuagcacgc
gcgcgagucggcggcucgcgcgaaagcccgcggcgcaaugaaggugaggg
ccggcgcgcgccggcugaggugggaucccggggcggcaggccggaaggcc
ccgggcgcaccaccggcccgucucgcccgccucgccggggagguggagca
ugagcgcgcgugcuaggacccgaaagauggugaacuaugccugggcaggg
cgaagccagaggaaacucugguggagguccguagcgguccugacgugcaa
aucggucguccgacccggguauaggggcgaaagacuaaucgaaccaucua
guagcugguucccuccgaaguuucccucaggauagcuggcgcucggggcg
gcggugcaguuuuacccgguaaagcgaaugauuagaggucuuggggccga
aacgaucucaaccuauucucaaacuuucaauggguaagacgcccggcucg
cuggcguggagccgggccguggaaugcgagcgcucagugggccacuuuug
guaagcagaacuggcgcugcgggaugaaccgaacgccggguuaaggcgcc
cgaugccgacgcucaucagagcccagaaaagguguugguugaucuagaca
gcgccgaaucaacuagcccugaaaauggauggcgcuggagcgucgggccc
auacccggccgucgccggcggugcggagccgcgggggcuacgccgcgacg
aguaggagggccgcugcggugcgccuggaagccuggggcgcgggcccggg
uggagccgccgcaggugcagaucuuggugguaguagcaacuauucaaacg
agagcuuugaaggccgaaguggagcaggguuccaugugaacagcaguuga
acaugggucagucgguccuaagcgauaggcgagcgccguuccgaagggac
gggcgauggccuccguugcccucagccgaucgaaagggagucggguucag
auccccgaauccggagcggcggagacgggcgccgcgaggcgcccagugcg
guaacgcaagcgaucccggagaagccggcgggagccccggggagaguucu
cuuuucuuugugaagggccgggcgcccuggaacggguucgccccgagaga
ggggcccgcgccuuggaaagcgucgcgguuccggcggcguccggugagcu
cucgcuggcccgugaaaauccgggggagaggguguaaaucucgcgccggg
ccguacccauauccgcagcaggucuccaaggugaacagccucuggcaugu
uggaccaauguagguaagggaagucggcaagccggauccguaacuucggg
auaaggauuggcucuaagggcugguagcagccggcuuagaacuggugcgg
accaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcccgc
ggcggguguugacgcgaugugauuucugcccagugcucugaaugucaaag
ugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugacucu
cuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugg
augaacgagauucccacugucccuaucuacuauccagcgaaaccacagcc
aagggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcu
ugacucuagucuggcgcugugaagagacaugagagguguagaauaagugg
gaggccccggccgccggugaaauaccacuacucugaucguuuuuucacuu
acccggugaggcgggggggcgagccccgaggggcucucgcuucuggcgcc
aagcgcccggcgcgcgccgggcgcgacccgcuccggggacagcgucaggu
ggggaguuugacuggggcgguacaccugucaaagcguaacgcaggugucc
uaaggcgagcucagggaggccagaaaccucccguggagcagaagggcaaa
agcucgcuugaucuugauuuucaguacgaauacagaccgugaaagcgggg
ccucacgauccuucugacuuuuuggguuuuaagcaggaggugucagaaaa
guuaccacagggauaacuggcuuguggcggccaagcguucauagcgacgu
cgcuuuuugauccuucgaugucggcucuuccuaucauugugaagcagaau
ucaccaagcguuggauuguucacccacuaauagggaacgugagcuggguu
uagaccgucgugagacagguuaguuuuacccuacugaugauguguuguug
cgcuaguaauccugcucaguacgagaggaaccgcagguucagacauuugg
uguaugugcuuggcugaggagccacuggagcgaggcuaccaucuguggga
uuaugacugaacgccucuaagucagaauccccccuaaacguagcgauacc
gcagcgccgaggcgccucggugggcucgcgauagccggccgccgcccccc
ucgggcgggcggucggugcggagcgccgcucguggucgggaccggagcgc
ggacagauguggcgccgccucucccccgccgcguaccgcauguucguggg
gaacccggugcuaaaucauucguagacgaccugauucugggucgggguuu
cguacguagcagagcagcucgcugcgaucuauugagagucagcccucgac
acaagcuuuugu
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>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<<....>>>
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>.......>>>>>>>>>>>......>>>>>>..>>>>>>>>>>>......
............<<<<<<<<<......>>><<<<<<..<<<<<<<.<<<<
<<<<<<<..<<<<<<<.<<<<....>>>>.>>>>>>>..>>>>>>>>>>>
..>>>>>>>.....>>>>.>>...>>>>>>.....>>>.>>>>>....>>
>>...>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<...<<<<........>>>>...>>>...<<....>>...<<
<<<<<....>>>>>>>..<<<<<...<<<<<<<<.............>>>
>>>>>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.
...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<
....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<.......
.>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>..
.>..>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......
.....<<<.<<<<<<<<<...<<<....<<<..<.<<<..<<<<<<....
.....>>>>>>>>>.>..>>>..>.>>...>>>>>>>...<<<<<<<<<.
<......>>>>>>>>>>.....>>>>>>>>>>>>..>>..<<<<.<<<<<
.....>>>>>.>>>>....<<<......>>>...<<<<<<<...<<<(((
.......<<<<<.....<<..........<<<.<<<<<<<<<<.......
<..>...>>>>>>>>>>>>>..........))).>>...>>>>>..>>>.
..>>>>>>><<<<<<.<<<......................>>>>>>>>>
....>>>>>>...<<<<<<<<.<<......<<<<<.<<<....>>>>>>>
>...>>>>>>>>>>........>>>>>><<.....<<.....<<<<<<..
.....>>>>>>.<<<.....<<<<..<<...<<<<<<...<<.....>>.
>>>>>>....((<<<<<<...<.....<<<....>>>..........<<.
<<<<<<<<<...>>>>>>>>>>>.......>....>>>..<<<<<.....
...>>>>>))<<<<....<<<<<...<<<<<<<....>>>>>>>...<<<
....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..{{
{..>>>>>>....<<<<<<<<<<.<<<<.....<<<.....>>>.....>
>>>>>>>>.>>>>>.....<<<<<<<.......>>>>>>>>>>>...>>>
>>>>>>>>>.........>>>>>>>..>..........>>.>>>.>>>>.
>>>..>>.....<<......>>.>>>>.<<<<.....>>>>..>>>....
<<<<.....<<<<<<<.<<...............<<<<<....<<..>>.
....>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>.......
.....<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<..
...>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<...<.
<<<<....>>>>.>...>>>.>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<.......>>>>>.....>.....>
>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<
<<<........>>>>>....[[[[[..{{{.{{......[[[[.{{[[[[
..<<<<<.<<<<<<<<<.<<<<<<<<<<...<<<<..........<<<<<
..<<<<..>>>>............>>>>>.>>>>....>>>>>>>>>>..
.<<<<<.....<<<<..<<.<<<<<<<..>>>>>>>>>............
..<<<<<<<<<<..>>>>>>>>>>..>>>>..>>>>>....>>>>>>>>>
..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<
...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>...
.>>>>>>>...<<<..<<<<.......>>>>..>>><<<<....>>>>>>
)))]......((((((..(((..>>>>>>.)))))))))..........]
]]]..}}]]]].......<<.<.<.<<<<<<...<<.......>>...>>
>>>>...>>.>.>.......<<<<<.<<<<<<..<.<.<<<<<......>
>>>>...>.>.<<<.........>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....}}..}}}.]]]]].....<<<<<<<
<..<<<..<.<<<<<.................>>>>>.><<<<....<<<
<...<<<.<<<<<<<}}}.>>>>>..>>.>>>..>>>>...>>>>.<<<<
...<<<<<...........>>>>>...>>>>..>>>...>>>>>>>>...
..<<<<<<<.<<..<<<<....<<<........<<<<<<<<<<..<<<..
..>>>..>>>>>>>>>>.......>>>...<<<<<<.<<<....<<<.<<
<<............>>>>>>>..>>>.>>>>>>..............>>>
>..>>>>>>>>><<<...<.............>....<<.<<<<<<<.<<
<....<<<<.<..<<<<<..>>>>>..>>>>>...>>>....>>>>.>>>
.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
K93 I95 R97 Y100 A101 R102 H104 R106 N109 R111 K112 K113 K114 G116 H117 N119 R122 K124 K125
Binding residue
(residue number reindexed from 1)
K17 I19 R21 Y24 A25 R26 H28 R30 N33 R35 K36 K37 K38 G40 H41 N43 R46 K48 K49
External links