Structure of PDB 8apn Chain Bm Binding Site BS01

Receptor Information
>8apn Chain Bm (length=113) Species: 353565 (Polytomella magna) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VQIQRVTLPPHQCVYMALKKVFGLGGPTSLAVVEACGISKGVRVRDLKEN
HVQQITQFIQDNFVTEDNLRRKVREDIVKLVNIKSRDGLRHDWGVSIKGH
TSCNGKTAKRLRH
Ligand information
>8apn Chain B3 (length=379) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gagcuccggcuaauugugugccagcagccgcgggaauacacaaggggcca
guuuaagguuaaaacaaggcaacgguguuuaaaaacuggaaaugcgccua
aaauagcuuaaugcguuggaguaaggguuaaaucuguaaaaaccuugcag
aaagccuuaaaguaaaagcagcuauucaugcccauaaaacagucuauaaa
cgagagcugcgguagcaaaacggauuagauacccguguagucccagccgu
aaauuauuuauuaaauuaaagcgccuagcgauauugccuauggcacuaaa
cuagggaaucugacagcauuaaacugacgcgguggagcauacuucuuaau
uugauaauacgcaaaaacauuaccacgau
..<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..
.................<<<......<<<<<...<<.....<<<.<<.<.
.<<<<<<<<..<<<...<<....<<<......>>>.......>>..>>>.
.>>.................>>>>>>.>.>>.>>>......>>...>>>>
>....<<<<.<...<<...<<<<.<.....>.>>>>...>>>.>>>>...
......<<<<......>>>>..>>>.<<......<<<<...>>>>.....
>>................................................
.<<........>>................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8apn Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		C104 N105 K107 T108 R111
Binding residue
(residue number reindexed from 1)		C103 N104 K106 T107 R110
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 18:41:53 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8apn', asym_id = 'Bm', bs = 'BS01', title = 'Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8apn', asym_id='Bm', bs='BS01', title='Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003676,0003723,0003735,0005840,0006412', uniprot = '', pdbid = '8apn', asym_id = 'Bm'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0003723,0003735,0005840,0006412', uniprot='', pdbid='8apn', asym_id='Bm')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>