Structure of PDB 6z1p Chain Bm Binding Site BS01

Receptor Information
>6z1p Chain Bm (length=224) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EFFQLNGYIFTKDTEFINTKKKIFGWNDYTYKIIYNRFEKFYSENLISYK
DTEWKKFKSILSTFFPKSRSLKNRMDTNIFFLDFLNTYRGLRHSKGLPVR
GQRTWTNAWSVYRSNLNLRKFKLEIAKRIYGNMPTPSLTTIYLAEQINYI
WKLQWKREWLQARSKRLKLMQNEHAMFKIDINSMSKGYIDGFDKKKENTF
TLGFEPGFTLFYLRPNKIKIVLNE
Ligand information
>6z1p Chain Bb (length=1385) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uguuuacagcuuaaagauuauuuuguacaauauuagguaauuauuucuaa
aacuguuuaauaauauuauuuuuaguaaaauaagccuagauguuuaguug
aauuuagagauuguucaaccacauacggguaugaaaacuacccuaucuuu
uugacagcagugaggaauuuuggacaauaugcgaaagcaugauccagcga
acuaauggaaacgaagaagauagcaauauuguaaaguuuagugcgagaau
uaacaaaugaguaaauucuaggagaagcucuggcuaauacaugugccagc
agccgcgguaauacaugaggagcaagcguuacccacauugacugggugua
uuaaauacauaggugauuacaaauacuacuuuaaaagucaauuaaaaacc
uaauauaguaguuuuuuuguaaaugauaauuaaauauaaggauaggagau
uuauagaacaacgauuaaauguaguuacacuauagagcuugccauaaacu
aaggugcuuuccuauauuuaauuauagcugauguaugaaaguacggggau
cgauaaggauuaguuucccuaguaguccguacuguaaaagaugaauacuu
caugaauuaaauauucagggauagcuaacgcaaaguauucuacucgggga
guauaaucgcaagauuaaaacuuaacugaauuggcgggaauuuguucgaa
cgguggaacaugugguuuaaugcgauaauccacgcaaaaucuuaccaacg
uuucaggcuuuaucaguaguaugauuaauaucaaaauuauaugauuuagu
acggaauugcauggcugucgucaguucgugcugugaaguuuaggauuaag
uucuuuuuaacgaaugcaacccuauaaguaaguuuuuauuuuaaaauaac
uuaauuuuuuaaauauacuuauuuaaucuauaauuagaauauauugaauc
uauucuguauauucuuuuauagggguuauaggcugaagucaagucccuau
ggucuuuauacguugggcuacacacguguuacaaggguaaauacaaaaag
acgcaaaaaaguaauuuugagcaaaccuuuaaaaauuaccuuaguucaga
uuguuuuaugaaauucuaaaacaugaagaugaaaucguuaguaauuguaa
auuauuauguuacagugaaacaauagucaaauuuugcacacaccgcccau
cacgcucggaaagucaauaauagcggaagauuugaaaaacucugcgcaaa
acuaauauuauuuuuauauuaguuggcauuauauuauuuuuuaauggcau
gguugaaaaguaguauccaaucuaguauugguaauuugagugaaguugac
acaagguacugguaggggaaccuguugguggaaua
............................<<<....<<<..<<<<<<<<<<
<.......<<<<....>>>>>>>>>..>>>>>>>>>.....>>>..<<<<
<<<<....>>>>...>>>>....<<.<<<<.........>>>>>><<...
..>>.................<<<...<<<<<....>>>>.>>>>.....
........<<<<......<<<<....>>>>.....>>>>......<<<<<
..<........>..>>>>>.......<<<<<(((.....<<<<.....<<
.)))>>.......>>>>.>>>>>.....................<<<((.
....<<<<<..<<<.<<<<<<<<..<<<<<.<<.................
...>>.>>>>>....>>>>>>.>>..<<<<<<<<<<<.<<<<.<<<<<.<
<<<<<<....<<<......>>>.......>>>>>>.>>>>.......<<.
...>>.>>.>>>>>>>>>>>>>>>..>>>..>>>>>...<<<<<<<<...
<....<<<.........>>>....>>>>>>>>>.........<<<<<<.<
<.<<<<.......>>>>..>>..<<..))>>...>>>>>>.>>>.<<<..
...<<<<<....>>>>>...>>>.........<<<<.<<<<<<<.....<
<<<<..<<<<<<<<<<......<<........>>..........<<<<<<
<.....<<<..<<<..<<<..<<<<....>>>>...>>>...>>>..>>>
..<<.<<<..<<<<<<.......<<<<<<<<<....>>>...<<<.....
.>>>.....>>>>>>.....<<<.<<<<<<<<....<<<<<.<<<<....
.....>>>>.>>>>>..>>>>>>>>..<<<<<<...<<<<<<<<.<<...
...>>.>>>>>>>>..>>>>>>.......>>>.........>>>...>>>
>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<.<....<<<<
..<<..<<<<....>>>>..>>....>>>>....>>>>>>......<...
.<<<<<<<........>>>>>>>....>.....>>>>>.....<<<<<<<
.........>>>>>>>...........>>>>>>>>>>.>........<<.
<.<<<<<<<<..<<<<<<<.<<<.....<<<.<......<.<<<.<<..<
<<<<<<<<.......>>>>>>>>>.......<...........>..>>.>
>>..>.......>.>>>....>>>.>>>>>>>..>>>>>>>>..>.>>..
.......<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z1p Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		G27 N29 Y90 H95 V101 R102 Q104 R105 T106 W107 N109 A110 W111 S112 V113 K197
Binding residue
(residue number reindexed from 1)		G25 N27 Y88 H93 V99 R100 Q102 R103 T104 W105 N107 A108 W109 S110 V111 K195
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005739 mitochondrion
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6z1p, PDBe:6z1p, PDBj:6z1p
PDBsum6z1p
PubMed32553108
UniProtQ951B9

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