Structure of PDB 4v5z Chain Bm Binding Site BS01

Receptor Information
>4v5z Chain Bm (length=175) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLG
YKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVA
EERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWIT
KPVHKHREMRGLTSAGRKSRGLGKG
Ligand information
>4v5z Chain B0 (length=2407) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agacguggcgacccgcugaauuuaagcauauuagucagcggaggaaaaga
aacuaaccaggauucccucaguaacggcgagugaacagggaagagcccag
cgccgaauccggacauggcguaggagucggguugcugggaagcagcccaa
agcggguggaaacuccaucuaaggcuaaauaccgcacgagaccgauaguc
aacaaguaccguaagggaaaguugaaaagaacuuugaagagagaguucaa
gagggcgugaaaccguuaagagguaaacggguggggucgcaguccgcccg
gaggauucaacccggcgucgcgagcguccaguaagacucacgggaaaccc
acccgacccgucuugaacacggaccaaggagucuaacacgugcgcgaguc
gggggcuacgaaagccgguggcgcaaugaaggugaagcacgagcgcacgu
guuaggacccgaaagauggugaacuaugccugggcagggcgaagccagag
gaaacucugguggagguccguagcggucugacgugcaaaucggucguccg
accuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucc
cuccgaaguuucccucaggauagcuggcgcucguuuuauccgguaaagcg
aaugauuagaggucuugauccaccuauucucaaacuuuaaaugguaagaa
ugcagugccuagugggccacuuuugguaagcagaacuggcgcugcgggau
gaccgaacgccggguuaaggcgcccgaugcgacgcucaucagaccccaga
aaagguguugguugauauagacagcaggacgguggccauggaagucggaa
uccgcuaaggaguguguaacaacucaccugccgaaucaacuagcccugaa
aaugguggcgcuggagcgucgggcccauacccggccgucccggccgcgac
gaguaggagggcgcugcggagccuugaagccagggcgcgggcccgggugg
gccgccgcaggugcagaucuuggugguaguagcaaauauucaaacgagaa
cuuugaaggccgaauggagaaggguuccaugugaacgcaguugaacaugg
gucagucgguccugagagauggccgucgaaagggagucggguucagaucc
ccgaauccgagucggagaagccgggagcuuugugaagggcggcccugaug
gguucgccccggagagggcccgugccuuggaaccgguagcucuggccuug
aaaaucguucgcgccgggccguacccauaucggcagcaggucuccaaggg
aacagccuggcauguuggaacaauguagguaagggaagucggcaagccgg
auccguaacuucgggauaaggauuggcucguagaacuggucggaccaggg
gaauccgacuguuuaauuaaaacaaagcaucgcgaaggccccggcgggug
uugacgcgaugugauuucugcccagugcucgaaugucaaagugaagaaau
ucaaugaagcgcggguaaacggcgggaguaacuaugacucucuuaaggua
gccaaaugccucgucaucuaauuagugacgcgcaugaauggaugaacgag
auucccacugucccuaccuacuauccagcgaaaccacagccaagggaacg
ggcuuggcggaaucagcggggaaagaagacccuguugagcuugacucuag
ucuggcacggugagagacaugagagguguagaauaagugggaggcccggc
cgccggugaaaaccacuacucugauguuuuucacugacggacagugccag
guggggaguuugacuggggcgguacaccugucaaacgguaacgcaggugu
ccuaaggcgagcucagggaggaccucccguggagcagaagggcaaaagcu
cgcuugaucuugauuuucguacgaauacagaccgugaaagcggggccuca
cgauccuucugcuuuuggguuuuaagcaggaggugucagaaaaguuacca
cagggauaacuggcuuguggcggccaagcguucauagcgacgucgcuuuu
ugauccuucgaugucggcucuuccuaucauugugaagcagaauucgccaa
gcguuggauuucacccacuaauagggaacgugagcuggguagaccgucgu
gagacagguuaguuuuacccuacugaugauguguugccaugguaauccug
cucaguacgagaggaaccgcagguucagacauuugguguaugugcuuggc
gagggccaauggggcgaagcuacaucugugggauuaugacugaacgccuc
uaagucagaaucccgcccaggcgacgauaaaccauucguagacgaccugc
uucuggugggguuucguacguagagagaucuauugaaaguccccuaccaa
ggguuug
.........(<<<<<<<<...[<<....>>.>.<[)>>>>>..>......
..<<....>>..<<<<<<<..[.<<.....>>>..>>>>>>>.......<
.<<....<<<>>>....>>.......<.<<<<<<<......>>>>>>>..
...<<<<<.((((((>>>>>...>>....................{.(>.
..)...<.<<....>>...>...<<......<<<<....>>>>..>>..{
...........................<<<<<<<<.<.....<..<..<.
...{{<((.(<.<<...).{>>.>.....>....>...>.....>.>>>>
>>>>>..<<<<...<...>>>>..<<<<....<<<<<<<<<<<<....<<
...<<<<.....>>>>...>>....]<....>...........>>>>>>>
>>>>>].<<.<..(<<<<<<....<<<<<<<<<<..<<<<(..<<<<<<<
....>>>>>>>...>.>>>...<<<<<[<............>>>>>>.).
.>>>>>>>>>>...<...<.].>).....]>>>>>>.......>>>><..
....(...[.<<<....>>>..(.<(<..<<..<<<.<(....<.<<...
<..<<<.<<..<........>..>>>>>.>.....>>...>>[).>>>..
...>>>>)..>.).......<.<<....>>..>...]..)].<<..<<..
...>>..<<<<...}...[{{..{.))..................>><..
...<<<<<<.<<.........<<<.......<.(................
>.........<<<<..)..>.>>>...>>>....>>.>>.>.>>>.>...
.....]}}..........}........}.}.>>.<<<<(.<.>..>>>..
>........).....<<<<....}.....(..(>>......)..).....
.>>>>.....}.......>>>><<<<<..[.......<(..<.......[
.>.>)....{....{<<<{............]..<.....><....>.<<
..}.<....<....<......<>..>......>.....<<....}..(>>
>....<.<<.<..<(....<...<<.....[<(..<<<....<.....(<
<)....>>....[..>........>>>>..)........>>>].......
....>...)>.>>..)>.>>....................>>>....]..
......[.........((....(.((.[...{<<......(....<....
.<<.........(>.....>......<<...>>.......>........<
<<<<<<<..).......>..{.....<<<<<<<<...<<<<....>>>>.
.>...>>>>>>>....<.<<<<..<<<<<<<..<<<....<<<<<....>
>>>.>...>>>>>>>>>..>>>>.<<<<.........>>>>.........
<...(.{.<...<<<<<....)..>>>>>>....>....>>.....>>.>
>>>>>...).>>...)]...)).).)<>>.....>>>.<<<<<<[.....
..>>>>>>...<<<<<..<<<........{<<<<<<[.[.[.<<<<<<.<
<<<<<<<<.<<<.<<<<<<<.<(.<(.......(..<<<...........
........)...)>>>..>>)..>>>>>>>.>>>...<>....>>>>>>>
>>..>>>>>.>.<<<[....>>>.(<<<<<<......)..>..>>>>>.<
.....<<<<<<<...<<<<<<.>>>>>>.....<<...(((>>....>>>
>>>>...<<<.<<<<.......[>>>.>>>><<<<....>>>>.>)))..
....<<<<<<<<<<..)))))).>>>>>>>>>>]..]...>>].]]....
>>>>.......<<.<...<<<<<<...<<.......>>...>>>>>>...
.>..>>]>....}<.<(.<.<<<<...<.<(<<<<.<..)..>>>>>...
>.>)<<<.......>>>......>>>>.(...>).>.><..<<<.<<<..
..>>>}.>>>..}.>....>>.>>>>>....<<<<<.<.<<<..<.<<<<
<.................>>>>>>.<<<<...}.<<<...<<<.<<<<<<
....>>>>>..]}>>>..>>>...>>>><<<<<...<<<<<.........
..>>>>>...>>>>>.>>>>.>>>>>..<<<<<.>..<<..]..>.>...
...<<<<<<<<<<......<<<<<..>.>>>>>...>>...>>>>>>>>.
.>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5z Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
Resolution8.7 Å
Binding residue
(original residue number in PDB)		Y4 R41 K47 R49 R50 Y53 K54 K56 R68 G69 G70 R71 R73 P84 K93 W120 K140 A141 R144 N145 L164 S166 R169 R172 L174 G175 K176 G177
Binding residue
(residue number reindexed from 1)		Y2 R39 K45 R47 R48 Y51 K52 K54 R66 G67 G68 R69 R71 P82 K91 W118 K138 A139 R142 N143 L162 S164 R167 R170 L172 G173 K174 G175
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Apr 18 00:55:33 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v5z', asym_id = 'Bm', bs = 'BS01', title = 'Structure of the Mammalian 80S Ribosome at 8.7 A Resolution'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v5z', asym_id='Bm', bs='BS01', title='Structure of the Mammalian 80S Ribosome at 8.7 A Resolution')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v5z', asym_id = 'Bm'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v5z', asym_id='Bm')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>