Structure of PDB 6xyw Chain Bi Binding Site BS01

Receptor Information
>6xyw Chain Bi (length=101) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KIKGTKICIAIRSFVNPEKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDK
KSREQFEMRFKKRFLVIKAQSHELSKKLFWLKRYRILGAQYELQFHCKTR
L
Ligand information
>6xyw Chain 2 (length=1743) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uagucaaaagaagaguuugauucuggcucagaaggaacgcuagcuauaug
cuuaacacaugcaagucgaacguuguucucggagcuaggcagcuccuagc
uccuugucucggggaagaguugagaacaaaguggcgaacgggugaguaag
gcgugggaaucugccgaacaguucgggccaaauccugaagaaagcuaaaa
agcgcuguuugaugagccugcguaguauuagguaguugguuagguaaagg
cugaccaagccaaugaugcuuagcuggucuuuucggaugaucagccacac
ugggacugagacacggcccggacucccacggggggcagcaguggggaauc
uuggacaaugggcgaaagccgauccagcaauaucgcgugagugaagaaag
gcaaugccgcuuguaaagcucuuucgucgagugcgcgaucaugacaggac
ucgaggaagaagccccggcuaacuccgugccagcagccgcgguaaaacgg
ggggggcaaguguucuucggaaugacugggcguaaagggcacguaggcgg
ugaaucggguugaaagugaaagucgccaaaaaguggcggaaugcuuucga
aaccaauucacuugagugagacagaggagaguggaauuucguguggaggg
gugaaaucuacagaucuacgaaggaacgccaaaagcgaaggcagcucucu
gggucccuaccgacgcuggggugcgaaagcauggggagcgaacgggauua
gauacccugguaguccaugccguaaacgaugaguguucgcccuuggucua
cgcagaucaggggcucagcuaacgcgugaacacuccgccuggggaguacg
gucgcaagaccaaaacucaaaggaauugacgggggccugcacaagcggug
gagcaugugguuuaauucgauacaacgcgcaaaaccuuaccagcccuuga
cauaugaacaacaaaaccuauccuuaacgggaugguacucacuuucauac
aggugcugcauggcugucgucagcucgugucgugagauguuuggucaagu
ccuauaacgagcgaaacccucgucuuguguugcucagacaugcgccuaag
gagaaaggcuugaaaaccgaagugagccaaggagccgagugaugugccag
accuagcuaggccaacucgacgucgcgacgucgaguuggcggcggagaaa
gacucggcauucaggcgagccgcccgguggugugggacgaaguaaguggg
uuuaguacgcccugccaaaacggcuccgaaacaaacaaaaaggugcgugc
cgcacucacgagggacugccagugauauacuggaggaagguggggaugac
gucaaguccgcauggcccuuaugggcugggccacacacgugcuacaaugg
caauuacaaugggaagcaaggcuguaaggcggagcgaauccggaaagauu
gccucaguucggauuguucucugcaacucgggaacaugaaguuggaaucg
cuaguaaucgcggaucagcaugccgcggugaauauguacccgggcccugu
acacaccgcccgucacacccugggaauugguuucgcccgaagcaucggaa
caaugaucacccaugacuucuguguaacacuagugccacaaaggcuuuug
guggucuuauuggcgcauaccacgguggggucuucgacuggggugaaguc
guaacaagguagccguaggggaaccuguggcuggauugaaucc
............<<<<..[.((((.>>>>.<<<<.<<<<<..<<.<<<<<
.....<<<.<<<..<<<..<<....<.<<<.<<<<<<<<.....>>>>>>
>><<<.<<<...>>>.>>>..>>>.>....>>>>>......<<.......
<<<<<<<..<<...<<<<<<<<<<<<<......>>>>>.....<<.....
.>>>>>>>>>>..>>.>>>>>>><<<....<<<...<<<<<<<.......
>>>>>>>.>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>.......
..<<<...<<<.......>>.>>>>..>>.>>>.>>..<<<<......<<
<<......>>>>.....>>>>...<.<<<<<<................>>
>>>>....>..<<<<<(((...<<<<<.....<<.)))>>.......>>>
>>>>>>>..>>>>>>>>>..........<<<((.....<<<<...<<<.<
<<<<<..<<<<<<<<<<.....<<<<<<.....>>>>>>...>>>>>>>.
.>>>.>>>>>>....<<<.<<<...<<<<<<<....<<<<<<<.<..<<<
......>>>.....>.>>>>>>>...........<<....>>.>>>>>>>
..>>>..>>>....>>>...>>>>....<<<<<<...<<...<<<<.<..
...>.>>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<<.
...>>>>>>>>>>>...<<..))>>....>>>>>>.>>>.<<<......<
<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<<..<<<<<.
.<<<<<<<<<<......<<........>>........<.<<<<<<<....
..<<<.<<..........<<<<<<....>>>>>>.........>>.>>>.
<<<.<<<..<<<<<<.......<<<<<<<<<....>>>....<<......
>>....>>>>>>.....<<<<.<<<<<.<(.<<.....<<<<<<<<....
.........................<<......<<<<<<<..<...<<..
....<..>.....<<<<<<<<<<<..>>>>>>>>>>>......>>...>.
.>>>>>>>......>>..................<<.<<....<<.....
>>.....>>.>>.............................>>>>>>>>.
.>>...>)>>>>>.....<<<<<<...>>>>>>........>>>>.....
....>>>...>>>>>>>>>...>>>>>>>>..>>.>>>>>>>>.....<<
<<<<<......<<..<<...<<<....>>>...>>....>>.....>>>>
>>>...........<<<<<<<........>>>>>>>..........>>>>
>.....<<<<<<<.........>>>>>>>......>>...>>>>>>>>>>
.>>....<..<<.<.<<<<<<<<.....<<<<<<<<<....<........
<<<<<<<<<.<......<...<.<............>.>....>.....>
.>>>>..>>>>>.......>...>>>>>>>>>.....>>>>>>>>..>.>
>...>.....<<<<<<<<<....>>>>>>>>>...........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xyw Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Resolution3.86 Å
Binding residue
(original residue number in PDB)		H150 T151 R152 K153 V154 M156 D158 L162 Y163 V165 L166 R167 P169 H170 K173 S175 R176 K185 R186 F187
Binding residue
(residue number reindexed from 1)		H27 T28 R29 K30 V31 M33 D35 L39 Y40 V42 L43 R44 P46 H47 K50 S52 R53 K62 R63 F64
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6xyw, PDBe:6xyw, PDBj:6xyw
PDBsum6xyw
PubMed32251374
UniProtP42797|RT10_ARATH Small ribosomal subunit protein uS10m (Gene Name=RPS10)

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