Structure of PDB 8q7z Chain Bf Binding Site BS01

Receptor Information
>8q7z Chain Bf (length=110) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSGRLWCKATFAGYKRGLRNQREHTALLKIEGVYARQETEFYLGKRCAYV
YKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR
IRVMLYPSRI
Ligand information
>8q7z Chain B5 (length=3562) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgcggauccccgccuccgccgggcgggccggggaccgccgcccggccggc
guccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccgg
cuccgggacggcugggaagggcugccggcgggcagguggcccgggccggg
uguuauagccgccgggcccggaucgucgccgaaucccggggccgagggag
aggaccgccgccgcgcccucccucgggggacgggcccgccggcccccggc
gccgcuguccggggcggacugcgcucagugcgccccgaccggcggcgccg
ccgggccgggcucgggccacgccagggcgcccgggguccgcggcgacguc
ggcuacccacccgacccgucuugaaacacggaccaaggagucuagcacgc
gcgcgagucggcggcucgcgcgaaagcccgcggcgcaaugaaggugaggg
ccggcgcgcgccggcugaggugggaucccggggcggcaggccggaaggcc
ccgggcgcaccaccggcccgucucgcccgccucgccggggagguggagca
ugagcgcgcgugcuaggacccgaaagauggugaacuaugccugggcaggg
cgaagccagaggaaacucugguggagguccguagcgguccugacgugcaa
aucggucguccgacccggguauaggggcgaaagacuaaucgaaccaucua
guagcugguucccuccgaaguuucccucaggauagcuggcgcucggggcg
gcggugcaguuuuacccgguaaagcgaaugauuagaggucuuggggccga
aacgaucucaaccuauucucaaacuuucaauggguaagacgcccggcucg
cuggcguggagccgggccguggaaugcgagcgcucagugggccacuuuug
guaagcagaacuggcgcugcgggaugaaccgaacgccggguuaaggcgcc
cgaugccgacgcucaucagagcccagaaaagguguugguugaucuagaca
gcgccgaaucaacuagcccugaaaauggauggcgcuggagcgucgggccc
auacccggccgucgccggcggugcggagccgcgggggcuacgccgcgacg
aguaggagggccgcugcggugcgccuggaagccuggggcgcgggcccggg
uggagccgccgcaggugcagaucuuggugguaguagcaacuauucaaacg
agagcuuugaaggccgaaguggagcaggguuccaugugaacagcaguuga
acaugggucagucgguccuaagcgauaggcgagcgccguuccgaagggac
gggcgauggccuccguugcccucagccgaucgaaagggagucggguucag
auccccgaauccggagcggcggagacgggcgccgcgaggcgcccagugcg
guaacgcaagcgaucccggagaagccggcgggagccccggggagaguucu
cuuuucuuugugaagggccgggcgcccuggaacggguucgccccgagaga
ggggcccgcgccuuggaaagcgucgcgguuccggcggcguccggugagcu
cucgcuggcccgugaaaauccgggggagaggguguaaaucucgcgccggg
ccguacccauauccgcagcaggucuccaaggugaacagccucuggcaugu
uggaccaauguagguaagggaagucggcaagccggauccguaacuucggg
auaaggauuggcucuaagggcugguagcagccggcuuagaacuggugcgg
accaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcccgc
ggcggguguugacgcgaugugauuucugcccagugcucugaaugucaaag
ugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugacucu
cuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugg
augaacgagauucccacugucccuaucuacuauccagcgaaaccacagcc
aagggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcu
ugacucuagucuggcgcugugaagagacaugagagguguagaauaagugg
gaggccccggccgccggugaaauaccacuacucugaucguuuuuucacuu
acccggugaggcgggggggcgagccccgaggggcucucgcuucuggcgcc
aagcgcccggcgcgcgccgggcgcgacccgcuccggggacagcgucaggu
ggggaguuugacuggggcgguacaccugucaaagcguaacgcaggugucc
uaaggcgagcucagggaggccagaaaccucccguggagcagaagggcaaa
agcucgcuugaucuugauuuucaguacgaauacagaccgugaaagcgggg
ccucacgauccuucugacuuuuuggguuuuaagcaggaggugucagaaaa
guuaccacagggauaacuggcuuguggcggccaagcguucauagcgacgu
cgcuuuuugauccuucgaugucggcucuuccuaucauugugaagcagaau
ucaccaagcguuggauuguucacccacuaauagggaacgugagcuggguu
uagaccgucgugagacagguuaguuuuacccuacugaugauguguuguug
cgcuaguaauccugcucaguacgagaggaaccgcagguucagacauuugg
uguaugugcuuggcugaggagccacuggagcgaggcuaccaucuguggga
uuaugacugaacgccucuaagucagaauccccccuaaacguagcgauacc
gcagcgccgaggcgccucggugggcucgcgauagccggccgccgcccccc
ucgggcgggcggucggugcggagcgccgcucguggucgggaccggagcgc
ggacagauguggcgccgccucucccccgccgcguaccgcauguucguggg
gaacccggugcuaaaucauucguagacgaccugauucugggucgggguuu
cguacguagcagagcagcucgcugcgaucuauugagagucagcccucgac
acaagcuuuugu
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>>...>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<...<<<<........>>>>...>>>...<<....>>...<<
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>>>>>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.
...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<
....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<.......
.>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>..
.>..>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......
.....<<<.<<<<<<<<<...<<<....<<<..<.<<<..<<<<<<....
.....>>>>>>>>>.>..>>>..>.>>...>>>>>>>...<<<<<<<<<.
<......>>>>>>>>>>.....>>>>>>>>>>>>..>>..<<<<.<<<<<
.....>>>>>.>>>>....<<<......>>>...<<<<<<<...<<<(((
.......<<<<<.....<<..........<<<.<<<<<<<<<<.......
<..>...>>>>>>>>>>>>>..........))).>>...>>>>>..>>>.
..>>>>>>><<<<<<.<<<......................>>>>>>>>>
....>>>>>>...<<<<<<<<.<<......<<<<<.<<<....>>>>>>>
>...>>>>>>>>>>........>>>>>><<.....<<.....<<<<<<..
.....>>>>>>.<<<.....<<<<..<<...<<<<<<...<<.....>>.
>>>>>>....((<<<<<<...<.....<<<....>>>..........<<.
<<<<<<<<<...>>>>>>>>>>>.......>....>>>..<<<<<.....
...>>>>>))<<<<....<<<<<...<<<<<<<....>>>>>>>...<<<
....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..{{
{..>>>>>>....<<<<<<<<<<.<<<<.....<<<.....>>>.....>
>>>>>>>>.>>>>>.....<<<<<<<.......>>>>>>>>>>>...>>>
>>>>>>>>>.........>>>>>>>..>..........>>.>>>.>>>>.
>>>..>>.....<<......>>.>>>>.<<<<.....>>>>..>>>....
<<<<.....<<<<<<<.<<...............<<<<<....<<..>>.
....>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>.......
.....<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<..
...>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<...<.
<<<<....>>>>.>...>>>.>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<.......>>>>>.....>.....>
>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<
<<<........>>>>>....[[[[[..{{{.{{......[[[[.{{[[[[
..<<<<<.<<<<<<<<<.<<<<<<<<<<...<<<<..........<<<<<
..<<<<..>>>>............>>>>>.>>>>....>>>>>>>>>>..
.<<<<<.....<<<<..<<.<<<<<<<..>>>>>>>>>............
..<<<<<<<<<<..>>>>>>>>>>..>>>>..>>>>>....>>>>>>>>>
..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<
...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>...
.>>>>>>>...<<<..<<<<.......>>>>..>>><<<<....>>>>>>
)))]......((((((..(((..>>>>>>.)))))))))..........]
]]]..}}]]]].......<<.<.<.<<<<<<...<<.......>>...>>
>>>>...>>.>.>.......<<<<<.<<<<<<..<.<.<<<<<......>
>>>>...>.>.<<<.........>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....}}..}}}.]]]]].....<<<<<<<
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..>>>..>>>>>>>>>>.......>>>...<<<<<<.<<<....<<<.<<
<<............>>>>>>>..>>>.>>>>>>..............>>>
>..>>>>>>>>><<<...<.............>....<<.<<<<<<<.<<
<....<<<<.<..<<<<<..>>>>>..>>>>>...>>>....>>>>.>>>
.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
M1 S2 G3 R4 W6 K8 K15 R16 L18 R19 N20 Q21 R22 E23 H24 K29 Y34 R36 G44 R46 Y51 K52 A53 K54 N55 T57 V58 P60 R66 T67 R68 V69 W71 K73 T75 R76 H78 G79 N80 S81 R85 K87 R89 S90 N91 P93 A94 H99 R100 R102 R109
Binding residue
(residue number reindexed from 1)
M1 S2 G3 R4 W6 K8 K15 R16 L18 R19 N20 Q21 R22 E23 H24 K29 Y34 R36 G44 R46 Y51 K52 A53 K54 N55 T57 V58 P60 R66 T67 R68 V69 W71 K73 T75 R76 H78 G79 N80 S81 R85 K87 R89 S90 N91 P93 A94 H99 R100 R102 R109
External links