Structure of PDB 4v7e Chain Bf Binding Site BS01

Receptor Information

>4v7e Chain Bf (length=71) Species: 4565 (Triticum aestivum)

KTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTF
MANHFDRHYCGKCGLTYVYNQ

Ligand information

>4v7e Chain Ad (length=1762)

uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaauuugaacugugaaacugcgaauggcuc
auuaaaucaguuauaguuuguuugaugguacgugcuacucggauaaccgu
aguaauucuagagcuaauacgugcaacaaaccccgacuucugggaggggc
gcauuuauuagauaaaaggcugacgcgggcucugcucgcugauccgauga
uucaugauaacucgacggaucgcacggccuucgugccggcgacgcaucau
ucaaauuucugcccuaucaacuuucgaugguaggauaggggccuaccaug
guggugacgggugacggagaauuaggguucgauuccggagagggagccug
agaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaa
uccugacacggggagguagugacaauaaauaacaauaccgggcgcauuag
ugucugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccau
uggagggcaagucuggugccagcagccgcgguaauuccagcuccaauagc
guauauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccg
gccggcaucgcgcuccuagccuuaauuggccgggucguguuuccggcauc
guuacuuugaagaaauuagagugcucaaagcaagccaucgcucuggauac
auuagcaugggauaacaucauaggauuccgguccuauuguguuggccuuc
gggaucggaguaaugauuaauagggacagucgggggcauucguauuucau
agucagaggugaaauucuuggauuuaugaaagacgaacaacugcgaaagc
auuugccaaggauguuuucauuaaucaagaacgaaaguugggggcucgaa
gacgaucagauaccguccuagucucaaccauaaacgaugccgaccaggga
ucggcggauguugcuuauaggacuccgccggcaccuuaugagaaaucaaa
gucuuuggguuccggggggaguauggucgcaaggcugaaacuuaaaggaa
uugacggaagggcaccaccaggcguggagccugcgcuuaauuugacucaa
cacggggaaacuuaccagguccagacauagcaaggauugacagacugaga
gcucuuucuugauucuaugggugguggugcauggccguucuuaguuggug
gagcgauuugucugguuaauuccguuaacgaacgagaccucagccugcua
acuagcuaugcggagccaucccuccgcagcuagcuucuuagagggacuau
ggccguuuaggccacggaaguuugaggcaauaacaggucugucaugcccu
uagauguucugggccgcacgcgcgcuacacugauguauucaacgaguaua
uagccuuggccgacaggcccggguaaucuugggaaauuucaucgugaugg
ggauagaucauugcaauuguuggucuucaacgaggaaugccuaguaagcg
cgagucaucagcucgcguugacuacgucccugcccuuuguacacaccgcc
cgucgcuccuaccgauugaaugguccggugaaguguucggaucgcggcga
cgggggcgguucgccgcccccgacgucgcgagaaguccauugaaccuuau
cauuuagaggaagcagaagucguaacaagguuuccguaggugaaccugcg
gaaggaucauug

...<<<<....[[[[.>>>>.<<<.<<<<<<...<.<<..<......<<<
.<<<..<<...<<.....<<...........>>....>>>>......<<.
.......<<<..<<..<<....<<<<<............<<.....<..<
<<.....>>>..>......>>..........<<<............>>>.
<...<..<<<.....[[[.(((((<<<.........>>>...........
....>>>.>......>........<<<<......>>>.>.....>>>>>.
..>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>
>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<...
.......>>>.>>...<<....>>.....>>>>>>.........<<<...
.<<<.....>>>..>>>..>>...>.>.....<<.<<.<<..........
....>>.>>..>>......<<.................>>.........<
<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>>..>>
>>>>>>>..........<.<{{.....<.<<...<<<.<.....<.<<<<
..>>>>.>...<..............<<<.....>>>............>
<<<<<<.<<.......<<...<.......>...<.......>.....>>.
.....>>.>>..>>>>.........<<<<<<<<<<.....))))).]]].
>>>>>>>>>>.......>....<<<<<<.<<...<<<<..<<..<<<<<<
<<...<<<......>>>......>>>>>>>>..>>.......<<....>>
...>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<<...<...
<<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<..
<<<<<<<<.<<<........>>>>>>>>>>>..>>>...<<..}}>>...
>>.....>>>.>.>.<<<......<<<<....>>>>....>>>..]]]].
.<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<.......<<......
..>>..........<<<<<.<....<<<<<........<<.<<<......
..>>>.>>......>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<
<<....>>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<
<..<<......<<<<......>>>>........>>..>>>>.>>.....<
<<<<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>>
.....>.>>>>>......>>>>.>>>.....<<<<.<.......<<....
...<<<.<<<<....>>>>.>>>....>>........>.>>>>.......
....<<<<<<..........>>>>>>..........>>>>>>....<<<<
<<<<.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..
<<.<..<.<<.<<....<<<<<<<..<<<..<<<<..<...<<...<<<.
<<<<<<<<<....>>>>>>>>>.>>>...>>...>..>>>>..>>>..>>
>>>>>...>>.>>.>...>.>>...>.....<<<<<<<<<....>>>>>>
>>>.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v7e Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
• Resolution: 5.5 Å
• Binding residue (original residue number in PDB): K7 T8 Y9 T10 K11 P12 K14 I15 H17 K18 H19 K20 K21 V22 K23 A25 V26 L27 R43 H60 R63 Y65
• Binding residue (residue number reindexed from 1): K1 T2 Y3 T4 K5 P6 K8 I9 H11 K12 H13 K14 K15 V16 K17 A19 V20 L21 R37 H54 R57 Y59

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Apr 7 11:35:58 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7e', asym_id = 'Bf', bs = 'BS01', title = 'Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7e', asym_id='Bf', bs='BS01', title='Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v7e', asym_id = 'Bf'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v7e', asym_id='Bf')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>