Structure of PDB 8q7z Chain Bd Binding Site BS01

Receptor Information
>8q7z Chain Bd (length=105) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTR
LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKGL
QTVNV
Ligand information
>8q7z Chain B5 (length=3562) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgcggauccccgccuccgccgggcgggccggggaccgccgcccggccggc
guccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccgg
cuccgggacggcugggaagggcugccggcgggcagguggcccgggccggg
uguuauagccgccgggcccggaucgucgccgaaucccggggccgagggag
aggaccgccgccgcgcccucccucgggggacgggcccgccggcccccggc
gccgcuguccggggcggacugcgcucagugcgccccgaccggcggcgccg
ccgggccgggcucgggccacgccagggcgcccgggguccgcggcgacguc
ggcuacccacccgacccgucuugaaacacggaccaaggagucuagcacgc
gcgcgagucggcggcucgcgcgaaagcccgcggcgcaaugaaggugaggg
ccggcgcgcgccggcugaggugggaucccggggcggcaggccggaaggcc
ccgggcgcaccaccggcccgucucgcccgccucgccggggagguggagca
ugagcgcgcgugcuaggacccgaaagauggugaacuaugccugggcaggg
cgaagccagaggaaacucugguggagguccguagcgguccugacgugcaa
aucggucguccgacccggguauaggggcgaaagacuaaucgaaccaucua
guagcugguucccuccgaaguuucccucaggauagcuggcgcucggggcg
gcggugcaguuuuacccgguaaagcgaaugauuagaggucuuggggccga
aacgaucucaaccuauucucaaacuuucaauggguaagacgcccggcucg
cuggcguggagccgggccguggaaugcgagcgcucagugggccacuuuug
guaagcagaacuggcgcugcgggaugaaccgaacgccggguuaaggcgcc
cgaugccgacgcucaucagagcccagaaaagguguugguugaucuagaca
gcgccgaaucaacuagcccugaaaauggauggcgcuggagcgucgggccc
auacccggccgucgccggcggugcggagccgcgggggcuacgccgcgacg
aguaggagggccgcugcggugcgccuggaagccuggggcgcgggcccggg
uggagccgccgcaggugcagaucuuggugguaguagcaacuauucaaacg
agagcuuugaaggccgaaguggagcaggguuccaugugaacagcaguuga
acaugggucagucgguccuaagcgauaggcgagcgccguuccgaagggac
gggcgauggccuccguugcccucagccgaucgaaagggagucggguucag
auccccgaauccggagcggcggagacgggcgccgcgaggcgcccagugcg
guaacgcaagcgaucccggagaagccggcgggagccccggggagaguucu
cuuuucuuugugaagggccgggcgcccuggaacggguucgccccgagaga
ggggcccgcgccuuggaaagcgucgcgguuccggcggcguccggugagcu
cucgcuggcccgugaaaauccgggggagaggguguaaaucucgcgccggg
ccguacccauauccgcagcaggucuccaaggugaacagccucuggcaugu
uggaccaauguagguaagggaagucggcaagccggauccguaacuucggg
auaaggauuggcucuaagggcugguagcagccggcuuagaacuggugcgg
accaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcccgc
ggcggguguugacgcgaugugauuucugcccagugcucugaaugucaaag
ugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugacucu
cuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugg
augaacgagauucccacugucccuaucuacuauccagcgaaaccacagcc
aagggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcu
ugacucuagucuggcgcugugaagagacaugagagguguagaauaagugg
gaggccccggccgccggugaaauaccacuacucugaucguuuuuucacuu
acccggugaggcgggggggcgagccccgaggggcucucgcuucuggcgcc
aagcgcccggcgcgcgccgggcgcgacccgcuccggggacagcgucaggu
ggggaguuugacuggggcgguacaccugucaaagcguaacgcaggugucc
uaaggcgagcucagggaggccagaaaccucccguggagcagaagggcaaa
agcucgcuugaucuugauuuucaguacgaauacagaccgugaaagcgggg
ccucacgauccuucugacuuuuuggguuuuaagcaggaggugucagaaaa
guuaccacagggauaacuggcuuguggcggccaagcguucauagcgacgu
cgcuuuuugauccuucgaugucggcucuuccuaucauugugaagcagaau
ucaccaagcguuggauuguucacccacuaauagggaacgugagcuggguu
uagaccgucgugagacagguuaguuuuacccuacugaugauguguuguug
cgcuaguaauccugcucaguacgagaggaaccgcagguucagacauuugg
uguaugugcuuggcugaggagccacuggagcgaggcuaccaucuguggga
uuaugacugaacgccucuaagucagaauccccccuaaacguagcgauacc
gcagcgccgaggcgccucggugggcucgcgauagccggccgccgcccccc
ucgggcgggcggucggugcggagcgccgcucguggucgggaccggagcgc
ggacagauguggcgccgccucucccccgccgcguaccgcauguucguggg
gaacccggugcuaaaucauucguagacgaccugauucugggucgggguuu
cguacguagcagagcagcucgcugcgaucuauugagagucagcccucgac
acaagcuuuugu
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..>>>>>>>.....>>>>.>>...>>>>>>.....>>>.>>>>>....>>
>>...>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<...<<<<........>>>>...>>>...<<....>>...<<
<<<<<....>>>>>>>..<<<<<...<<<<<<<<.............>>>
>>>>>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.
...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<
....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<.......
.>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>..
.>..>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......
.....<<<.<<<<<<<<<...<<<....<<<..<.<<<..<<<<<<....
.....>>>>>>>>>.>..>>>..>.>>...>>>>>>>...<<<<<<<<<.
<......>>>>>>>>>>.....>>>>>>>>>>>>..>>..<<<<.<<<<<
.....>>>>>.>>>>....<<<......>>>...<<<<<<<...<<<(((
.......<<<<<.....<<..........<<<.<<<<<<<<<<.......
<..>...>>>>>>>>>>>>>..........))).>>...>>>>>..>>>.
..>>>>>>><<<<<<.<<<......................>>>>>>>>>
....>>>>>>...<<<<<<<<.<<......<<<<<.<<<....>>>>>>>
>...>>>>>>>>>>........>>>>>><<.....<<.....<<<<<<..
.....>>>>>>.<<<.....<<<<..<<...<<<<<<...<<.....>>.
>>>>>>....((<<<<<<...<.....<<<....>>>..........<<.
<<<<<<<<<...>>>>>>>>>>>.......>....>>>..<<<<<.....
...>>>>>))<<<<....<<<<<...<<<<<<<....>>>>>>>...<<<
....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..{{
{..>>>>>>....<<<<<<<<<<.<<<<.....<<<.....>>>.....>
>>>>>>>>.>>>>>.....<<<<<<<.......>>>>>>>>>>>...>>>
>>>>>>>>>.........>>>>>>>..>..........>>.>>>.>>>>.
>>>..>>.....<<......>>.>>>>.<<<<.....>>>>..>>>....
<<<<.....<<<<<<<.<<...............<<<<<....<<..>>.
....>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>.......
.....<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<..
...>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<...<.
<<<<....>>>>.>...>>>.>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<.......>>>>>.....>.....>
>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<
<<<........>>>>>....[[[[[..{{{.{{......[[[[.{{[[[[
..<<<<<.<<<<<<<<<.<<<<<<<<<<...<<<<..........<<<<<
..<<<<..>>>>............>>>>>.>>>>....>>>>>>>>>>..
.<<<<<.....<<<<..<<.<<<<<<<..>>>>>>>>>............
..<<<<<<<<<<..>>>>>>>>>>..>>>>..>>>>>....>>>>>>>>>
..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<
...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>...
.>>>>>>>...<<<..<<<<.......>>>>..>>><<<<....>>>>>>
)))]......((((((..(((..>>>>>>.)))))))))..........]
]]]..}}]]]].......<<.<.<.<<<<<<...<<.......>>...>>
>>>>...>>.>.>.......<<<<<.<<<<<<..<.<.<<<<<......>
>>>>...>.>.<<<.........>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....}}..}}}.]]]]].....<<<<<<<
<..<<<..<.<<<<<.................>>>>>.><<<<....<<<
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..<<<<<<<.<<..<<<<....<<<........<<<<<<<<<<..<<<..
..>>>..>>>>>>>>>>.......>>>...<<<<<<.<<<....<<<.<<
<<............>>>>>>>..>>>.>>>>>>..............>>>
>..>>>>>>>>><<<...<.............>....<<.<<<<<<<.<<
<....<<<<.<..<<<<<..>>>>>..>>>>>...>>>....>>>>.>>>
.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
R74 T77 N79 H81 K82 R83 H85 G86 F89 K90 K98 R101 I115 T117 N120 W124 K126 I128 R129 N130 Y133 R134 K166 G167 L168 Q169
Binding residue
(residue number reindexed from 1)
R6 T9 N11 H13 K14 R15 H17 G18 F21 K22 K30 R33 I47 T49 N52 W56 K58 I60 R61 N62 Y65 R66 K98 G99 L100 Q101
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