Structure of PDB 8jiw Chain Ba Binding Site BS01

Receptor Information
>8jiw Chain Ba (length=98) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVR
DVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNREPPQ
Ligand information
>8jiw Chain Ad (length=1571) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguacguacucggauaaccguaguaa
uucuagagcuaauacgugcaacaaaccccgacugggcgcauuuauuagau
augauccgaugauucaugauaacucgacggaucgcacggccgccggcgac
gcaucauucaaauuucugcccuaucaacuuucgaugguaggauaggggcc
uaccaugguggugacgggugacggagaauuaggguucgauuccggagagg
gagccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaau
uacccaauccugacacggggagguagugacaauaaauaacaauaccgggu
gucugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauu
ggagggcaagucuggugccagcagccgcgguaauuccagcuccaauagcg
uauauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgg
caucguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccaugaguaaugauuaaua
gggacagucgggggcauucguauuucauagucagaggugaaauucuugga
uuuaugaaagacgaacaacugcgaaagcauuugccaaggauguuuucauu
aaucaagaacgaaaguugggggcucgaagacgaucagauaccguccuagu
cucaaccauaaacgaugccgaccagggaucggcggauguugcaggacucc
gccggcaccuuaugagaaaucaaagucuuuggguuccggggggaguaugg
ucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggcgug
gagccugcguuugaccaacacggggaaacuuaccgguccagacaagcaga
cugagagcucuuucuaugggugguggugcauggguucuuaguugguggag
cgauuugucugguuaauuccguuaacgaacgagaccucagccugcuaacu
agcuaugcggagcccuccgcagcuagcuucuuagagggacuaucgccguu
uaggcgacggaaguuugaggcaauaacaggucugugaugcccuuagaugu
ucugggccgcacgcgcgcuacacugauguauucaacgaguauauagccuu
ggccgacaggcccggguaaucuuggaauuucaucgugauggggauagauc
auugcaauuggucuucaacgaggaaugccuaguaagcgcgagucaucacu
cgcguugacuacgucccugcccuuuguacacaccgcccgucgcuccuacc
gauugaaugguccggugaaguguucggaucgcggucgcgagaaguccauu
gaaccuuaucauuuagaggaaggagaagucguaacaagguuuccguaggu
gaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.........<<.....<..<<<...
..>>>..>......>>.........<<<.....>>>.....<<<<<<...
................>>>>>>.........<<<<.<<<<.>>>>>>>>.
.>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>
>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<
.<<<..........>>>.>>.<.<<....>>.>...>>>>>>........
.<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<<<.
.>>>>>>>.>>>......<<<.<...........>>.>>.........<<
<<<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>
>>>>>>..........<.<((.....<.<<...<<<.<............
....<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>........<<<<...>>>>......>....
<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<......>>>.....
.>>>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...
>>>...>>.>....<<<<<<<...<...<<<<.........>>>>...>>
>>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<....>>>>>>
>>>>>..>>>...<<..))>>...>>.....>>>.>.>.<<<......<<
<<....>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<.
.<<<.<<<<..<<.......>>..........<<<<......<<<<.<<.
.......>>....>>.>>...<<.<<<..<<.........<<<.<<<<..
....>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<<..
<<<<.<<<<<<<..>>>>>>>...>>>>..>>>>.>>.....<<<<<...
..>>>>>........>>>>>................>>>>>>>.......
>>.>>......>>>>.>>>.....<<<<.<.......<<.......<<<.
<<<<....>>>>.>>>....>>......>.>>>>......<....<<<<<
<.......>>>>>>....>.....>>>>>>....<<<<<<<<......>>
>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<<.<<
....<<<<<<<..<<<..<<<<..<...<<<<<..>>>>>...>..>>>>
..>>>..>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<<<<<.
...>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB8jiw Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes.
Resolution2.88 Å
Binding residue
(original residue number in PDB)		T2 F3 K4 R5 R6 N7 G9 R10 N11 K12 H13 R15 G16 H17 Y20 K32 K34 R38 F39 V75 S76 I79 H80 H82 R85 R87 S88 R89 R92 R93 R95 P98
Binding residue
(residue number reindexed from 1)		T1 F2 K3 R4 R5 N6 G8 R9 N10 K11 H12 R14 G15 H16 Y19 K31 K33 R37 F38 V74 S75 I78 H79 H81 R84 R86 S87 R88 R91 R92 R94 P97
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8jiw, PDBe:8jiw, PDBj:8jiw
PDBsum8jiw
PubMed38458197
UniProtA0A3B6KQB8

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