Structure of PDB 4v92 Chain Ba Binding Site BS01

Receptor Information

>4v92 Chain Ba (length=97) Species: 28985 (Kluyveromyces lactis)

PKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVR
DLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPP

Ligand information

>4v92 Chain A2 (length=1764)

uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagac
guuugguucuauuuuguugguuucuaggaccaucguaaugauuaauaggg
acggucgggggcaucaguauucaauugucagaggugaaauucuuggauuu
auugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaau
caagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucuu
aaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugaccc
acucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguaug
gucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggagu
ggagccugcggcuuaauuugacucaacacggggaaacucaccagguccag
acacaauaaggauugacagauugagagcucuuucuugauuuugugggugg
uggugcauggccguucuuaguugguggagugauuugucugcuuaauugcg
auaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcugg
uuauccacuucuuagagggacuaucgguuucaagccgauggaauuugagg
caauaacaggucugugaugcccuuagacguucugggccgcacgcgcgcua
cacugacggagccagcgagucuaaccuuggccgagaggucuugguaaucu
uggaaacuccgucgugcuggggauagagcauuguaauuauugcucuucaa
cgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacguccc
ugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuuagug
aggccucaggaucugcuuagagaucucagagcggagaauuuggacaaacu
uggucauuuagaggaacuaaaagucguaacaagguuuccguaggugaacc
ugcggaaggaucau

...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<..........<<.
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....<<<<<<......((((.{..<<.<..>.>>.............
.>>>>>>.........<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<......>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>.>>.........<<<....<<<
.....>>>..>>>.......>.>.....<..<<<<<<..<<....>>..>
>>>>>....>.....<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<<....<..>....>>>>>.>>>>>>.....<<<<<....<......<..
.....>......>....>>>>>....<<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>>........<<
...<<<<<<<.......}.))))..>>>>>>>..>>.....>>....<<<
<<<.<<...<<<<..<<<.<<<<<<.<...<<<......>>>......>.
>>>>>>.>>>.......<<....>>...>>>>...>>>>>.>>>...>>>
...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<.<<.<<<..<<<<<<<<..<<........>>.>>
>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......<
<<......>>>....>>>..)))).}...<<.<<<<<<<..<<.<<<<<.
...<<.<<<<<<......<<........>>..........<<<<<.....
.<<<<<........<<.<<<........>>>.>>......>>>>>...<<
.<<<..<<.<<.<<<....<<<.<<.<......>....<<<......>>>
...>>.>>>....<<<<..<<..<<<<..<<<<<.<..<<<....>>>..
>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>>>
....>>>..>>.....>>>>>>>.......>>>>>...>>.>>>>.>>..
....<<<<<<<......<<.....<<..<<<<....>>>>..>>....>>
......>>>>>>>...........<<<<<<..........>>>>>>....
.......>>>>>....<<<<<<<<.......>>>>>>>>......>>...
>>>>>>>>>...........<<.<..<<<<.<<....<<<<<<<<.<<<.
.<.<<..<....<<.<<<.<<....>>.>>>.>>....>..>>.>..>>>
.>>>>>>>>...>>.>>>>...>.>>..........<<<<<<<<....>>
>>>>>>........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v92 Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome.
• Resolution: 3.7 Å
• Binding residue (original residue number in PDB): P2 K3 K4 R5 A6 R10 N11 K13 G14 R15 G16 H17 V18 K19 R22 K32 K37 V86 R87 S88 R89 E90 D91 R92 K93 N94 R95 A96 P97
• Binding residue (residue number reindexed from 1): P1 K2 K3 R4 A5 R9 N10 K12 G13 R14 G15 H16 V17 K18 R21 K31 K36 V85 R86 S87 R88 E89 D90 R91 K92 N93 R94 A95 P96

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 01:42:10 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v92', asym_id = 'Ba', bs = 'BS01', title = 'Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v92', asym_id='Ba', bs='BS01', title='Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v92', asym_id = 'Ba'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v92', asym_id='Ba')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>