Structure of PDB 8q87 Chain BZ Binding Site BS01

Receptor Information
>8q87 Chain BZ (length=135) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPR
KVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVF
RDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
Ligand information
>8q87 Chain B5 (length=3638) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgccggauccccgccuccgccgggcgggccggggaccgccgcccggccgg
cguccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccg
gcuccgggacggcugggaagggcugccggcgggcagguggcccggcgccg
cgcgagcggccgccggguguuauagccgccgggcccggaucgucgccgaa
ucccggggccgagggagaggaccgccgccgcgcccucccccgggggacgg
gcccgccggcccccggcgccgcuguccgggggcggacugcgcucagugcg
ccccgaccggcggcgccgccgggccgggcucgggccacgccagggcgccc
gggguccgcggcgacgucggcuacccacccgacccgucuugaaacacgga
ccaaggagucuagcacgcgcgcgagucggcggcucgcgcgaaagcccgcg
gcgcaaugaaggugagggccggcgcgcgccggcugaggugggaucccggg
gcggcaggccggaaggccccgggcgcaccaccggcccgucucgcccgccu
cgccggggagguggagcaugagcgcgcgugcuaggacccgaaagauggug
aacuaugccugggcagggcgaagccagaggaaacucugguggagguccgu
agcgguccugacgugcaaaucggucguccgacccggguauaggggcgaaa
gacuaaucgaaccaucuaguagcugguucccuccgaaguuucccucagga
uagcuggcgcucggggcggcggugcaguuuuacccgguaaagcgaaugau
uagaggucuuggggccgaaacgaucucaaccuauucucaaacuuucaaug
gguaagacgcccggcucgcuggcguggagccgggccguggaaugcgagcg
cucagugggccacuuuugguaagcagaacuggcgcugcgggaugaaccga
acgccggguuaaggcgcccgaugccgacgcucaucagagcccagaaaagg
uguugguugaucuagacagcaggacgguggccauggaagucggaacccgc
uaaggaguguguaacaacucaccugccgaaucaacuagcccugaaaaugg
auggcgcuggagcgucgggcccauacccggccgucgccggcggugcggag
ccgcgggggcuacgccgcgacgaguaggagggccgcugcggugcgccugg
aagccuggggcgcgggcccggguggagccgccgcaggugcagaucuuggu
gguaguagcaacuauucaaacgagagcuuugaaggccgaaguggagcagg
guuccaugugaacagcaguugaacaugggucagucgguccuaagcgauag
gcgagcgccguuccgaagggacgggcgauggccuccguugcccucagccg
aucgaaagggagucggguucagauccccgaauccggagcggcggagacgg
gcgccgcgaggcgcccagugcgguaacgcaagcgaucccggagaagccgg
cgggagccccggggagaguucucuuuucuuugugaagggccgggcgcccu
ggaacggguucgccccgagagaggggcccgcgccuuggaaagcgucgcgg
uuccggcggcguccggugagcucucgcuggcccgugaaaauccgggggag
aggguguaaaucucgcgccgggccguacccauauccgcagcaggucucca
aggugaacagccucuggcauguuggaccaauguagguaagggaagucggc
aagccggauccguaacuucgggauaaggauuggcucuaagggcugguagc
agccggcuuagaacuggugcggaccaggggaauccgacuguuuaauuaaa
acaaagcaucgcgaaggcccgcggcggguguugacgcgaugugauuucug
cccagugcucugaaugucaaagugaagaaauucaaugaagcgcggguaaa
cggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucu
aauuagugacgcgcaugaauggaugaacgagauucccacugucccuaucu
acuauccagcgaaaccacagccaagggaacgggcuuggcggaaucagcgg
ggaaagaagacccuguugagcuugacucuagucuggcgcugugaagagac
augagagguguagaauaagugggaggccccggccgccggugaaauaccac
uacucugaucguuuuuucacuuacccggugaggcgggggggcgagccccg
aggggcucucgcuucuggcgccaagcgcccggcgcgcgccgggcgcgacc
cgcuccggggacagcgucagguggggaguuugacuggggcgguacaccug
ucaaagcguaacgcagguguccuaaggcgagcucagggaggccagaaacc
ucccguggagcagaagggcaaaagcucgcuugaucuugauuuucaguacg
aauacagaccgugaaagcggggccucacgauccuucugacuuuuuggguu
uuaagcaggaggugucagaaaaguuaccacagggauaacuggcuuguggc
ggccaagcguucauagcgacgucgcuuuuugauccuucgaugucggcucu
uccuaucauugugaagcagaauucaccaagcguuggauuguucacccacu
aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua
cccuacugaugauguguuguugcgcuaguaauccugcucaguacgagagg
aaccgcagguucagacauuugguguaugugcuuggcugaggagccacugg
agcgaggcuaccaucugugggauuaugacugaacgccucuaagucagaau
ccccccuaaacguagcgauaccgcagcgccgaggcgccucggugggcucg
cgauagccggccgccgccccccucgggcgggcggucggugcggagcgccg
cucguggucgggaccggagcgcggacagauguggcgccgccucucccccg
ccgcguaccgcauguucguggggaacccggugcuaaaucauucguagacg
accugauucugggucgggguuucguacguagcagagcagcucccucgcug
cgaucuauugagagucagcccucgacacaagcuuuugu
.........................<<<<<<.....<......>......
>>>>>.>.........<<....>>..<<<<<<.....<<.....>>....
>>>>>>..[[[..<<<<<...<<<<<<<<<<.....>>>>>>.>>>>...
..>>>>>..<<<<<<<<<....<<<<<<<<.<<.....<<<<<<<<....
<<<<......>>>>.....((......<<<.....))>>>...>.>>>>>
>>.>>>>>>>>>>...>>>>>>>>>.......<<<<<<<........>>>
>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<......>>
>..................................<<<<<<<<..<<<.<
......<<<<<<<<<<.....<<<<<<<<<....<<<<<<<<<<<..<<.
...<<<.<<<<<<.<<<........>>>.>>>>>>>>>...>>..>>>>>
...>>>>>>>>>>>>>>>......>>>>>>>.>>>.....<<<<<<<<<<
<<<<<<<<<<<<<...<<.<<<<..<<<<<<<.......<<<<<<<<...
..........>>>>>>>>.......>>>>>>>>>>>......>>>>>>..
>>>>>>>>>>>..................<<<<<<<<<<<..>>>>><<<
<<<..<<<<<<<.<<<<<<<<<<<....<<<<<<.<<<<....>>>>.>>
>>>>...>>>>>>>>>>>..>>>>>>>.....>>>>.>>...>>>>>>..
...>>>.>>>>>....>>>>...>>>>>>>>..<<<<........>>>><
<<<<<....<<<<<<<<<<<<<..<<<...<<<<........>>>>...>
>>...<<....>>...<<<<<<<....>>>>>>>..<<<<<...<<<<<<
<<.............>>>>>>>>....>>>>>.<<<<<<<<<.<<<<...
...>>>>>>>>>>>.>>....>>>>>>>>>>>>>..<<.<..<<<<<<<.
....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>..
.<<<..<<.<<........>>>>.>>>....>>>>>>>>>...<<.....
..>>......>>>>>>...>..>.>>..<<<<<<....<.<<<....>>>
.><<.<<<<<<<...........<<<.<<<<<<<<<...<<<....<<<.
.<.<<<..<<<<<<.........>>>>>>>>>.>..>>>..>.>>...>>
>>>>>...<<<<<<<<<.<......>>>>>>>>>>.....>>>>>>>>>>
>>..>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>.
..<<<<<<<...<<<(((.......<<<<<.....<<..........<<<
.<<<<<<<<<<.......<<<<<.<<<...<<.........>>...>>>.
........<<......>>...>>>>>...>>>>>>>>>>>>>........
..))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<.........
.............>>>>>>>>>....>>>>>>...<<<<<<<<.<<....
..<<<<<.<<<....>>>>>>>>...>>>>>>>>>>........>>>>>>
<<.....<<.....<<<<<<.......>>>>>>.<<<.....<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<.....<
<<....>>>..........<<.<<<<<<<<<...>>>>>>>>>>>.....
..>....>>>..<<<<<........>>>>>))<<<<....<<<<<...<<
<<<<<....>>>>>>>...<<<....>>>...<..<<<<<<<...<<<<<
<<<<<<<.<<<<<<<<<<..{{{..>>>>>>....<<<<<<<<<<.<<<<
.....<<<.....>>>.....>>>>>>>>>.>>>>>.....<<<<<<<..
.....>>>>>>>>>>>...>>>>>>>>>>>>.........>>>>>>>..>
..........>>.>>>.>>>>.>>>..>>.....<<......>>.>>>>.
<<<<.....>>>>..>>>....<<<<.....<<<<<<<.<<.........
<.....<<<<<....<....>.....>>>>><<.<<<<<<<<<<<....>
>>>>..>>>>>>.>>............<<<<<<<<<..<<<.........
>>>..<<<<<<<....<<<<.....>>>>......>>>>>>>...<<..<
<<..<<<<<<....<<<...<.<<<<....>>>>.>...>>>.>>>>..>
>>>><<<<<<.......>>>>>>........<...........<<<<<..
.....>>>>>.....>.....>>....>>.>>>>>>>..>..>>.>>>>>
>>..>>>>>>....>>....<<<<<........>>>>>....[[[[[..{
{{.{{......[[[[.{{[[[[..<<<<<.<<<<<<<<<.<<<<<<<<<<
<<.<<<<..........<<<<<..<<<<..>>>>............>>>>
>.>>>>.>>.>>>>>>>>>>...<<<<<.....<<<<..<<.<<<<<<..
..>>>>>>>>..............<<<<<<<<<<..>>>>>>>>>>..>>
>>..>>>>>....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<<
<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>
>>>>.....<<.[.(((>>....>>>>>>>...<<<..<<<<.......>
>>>..>>><<<<....>>>>>>)))]......((((((.[.((..>>>>>
>.))]))))))..........]]]]..}}]]]].......<<.<.<.<<<
<<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<
<<<<..<.<.<<<<<......>>>>>...>.>.<<<.........>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}.
.}}}.]]]]].....<<<<<<<<..<<<..<.<<<<<.............
....>>>>>.><<<<....<<<<....<<.<<<<<<<}}}.>>>>>..>>
.>>...>>>>...>>>>.<<<<...<<<<<...........>>>>>...>
>>>..>>>...>>>>>>>>.....<<<<<<<.<<..<<<<....<<<...
.....<<<<<<<<<<..<<<....>>>..>>>>>>>>>>.......>>>.
..<<<<<<.<<<....<<<.<<<<............>>>>>>>..>>>.>
>>>>>..............>>>>..>>>>>>>>><<<...<.........
....>....<<.<<<<<<<.<<<....<<<<.<..<<<<<......>>>>
>..>>>>>...>>>....>>>>.>>>.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
A15 G16 R17 R36 Y38 R48 R51 K52 T54 A55 G58 K59 K64 R65 K67 K69 K73 V74 Y75 N76 H79 K107 R111 R112 K115 K133 R135 F136
Binding residue
(residue number reindexed from 1)
A14 G15 R16 R35 Y37 R47 R50 K51 T53 A54 G57 K58 K63 R64 K66 K68 K72 V73 Y74 N75 H78 K106 R110 R111 K114 K132 R134 F135
External links
PDB RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum8q87
PubMed
UniProtP61355|RL27_CHICK Large ribosomal subunit protein eL27 (Gene Name=RPL27)

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