Structure of PDB 4v92 Chain BX Binding Site BS01

Receptor Information
>4v92 Chain BX (length=142) Species: 28985 (Kluyveromyces lactis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKG
IVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNAGCLNFVDENDE
VLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKP
Ligand information
>4v92 Chain A2 (length=1764) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagac
guuugguucuauuuuguugguuucuaggaccaucguaaugauuaauaggg
acggucgggggcaucaguauucaauugucagaggugaaauucuuggauuu
auugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaau
caagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucuu
aaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugaccc
acucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguaug
gucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggagu
ggagccugcggcuuaauuugacucaacacggggaaacucaccagguccag
acacaauaaggauugacagauugagagcucuuucuugauuuugugggugg
uggugcauggccguucuuaguugguggagugauuugucugcuuaauugcg
auaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcugg
uuauccacuucuuagagggacuaucgguuucaagccgauggaauuugagg
caauaacaggucugugaugcccuuagacguucugggccgcacgcgcgcua
cacugacggagccagcgagucuaaccuuggccgagaggucuugguaaucu
uggaaacuccgucgugcuggggauagagcauuguaauuauugcucuucaa
cgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacguccc
ugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuuagug
aggccucaggaucugcuuagagaucucagagcggagaauuuggacaaacu
uggucauuuagaggaacuaaaagucguaacaagguuuccguaggugaacc
ugcggaaggaucau
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<..........<<.
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....<<<<<<......((((.{..<<.<..>.>>.............
.>>>>>>.........<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<......>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>.>>.........<<<....<<<
.....>>>..>>>.......>.>.....<..<<<<<<..<<....>>..>
>>>>>....>.....<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<<....<..>....>>>>>.>>>>>>.....<<<<<....<......<..
.....>......>....>>>>>....<<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>>........<<
...<<<<<<<.......}.))))..>>>>>>>..>>.....>>....<<<
<<<.<<...<<<<..<<<.<<<<<<.<...<<<......>>>......>.
>>>>>>.>>>.......<<....>>...>>>>...>>>>>.>>>...>>>
...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<.<<.<<<..<<<<<<<<..<<........>>.>>
>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......<
<<......>>>....>>>..)))).}...<<.<<<<<<<..<<.<<<<<.
...<<.<<<<<<......<<........>>..........<<<<<.....
.<<<<<........<<.<<<........>>>.>>......>>>>>...<<
.<<<..<<.<<.<<<....<<<.<<.<......>....<<<......>>>
...>>.>>>....<<<<..<<..<<<<..<<<<<.<..<<<....>>>..
>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>>>
....>>>..>>.....>>>>>>>.......>>>>>...>>.>>>>.>>..
....<<<<<<<......<<.....<<..<<<<....>>>>..>>....>>
......>>>>>>>...........<<<<<<..........>>>>>>....
.......>>>>>....<<<<<<<<.......>>>>>>>>......>>...
>>>>>>>>>...........<<.<..<<<<.<<....<<<<<<<<.<<<.
.<.<<..<....<<.<<<.<<....>>.>>>.>>....>..>>.>..>>>
.>>>>>>>>...>>.>>>>...>.>>..........<<<<<<<<....>>
>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4v92 Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		G2 K3 G4 K5 P6 R7 G8 L9 N10 S11 A12 R13 K14 L15 R16 V17 H18 R19 R20 N21 N22 W24 A25 E26 N27 N28 R32 L33 L34 G35 F38 K39 F43 S46 S47 H48 K50 G51 I52 K62 Q63 P64 N65 S66 A67 I68 R69 I77 K78 F86 V87 P88 N89 A90 D100 E101 V102 L103 L104 A105 G106 F107 R109 K112 A113 K114 G115 D116 I117 P118 G119 R121 F122 K123 V124 V125 K126 V127 S128 G129 V130 S131 L132 L133 A134 L135 W136 K137 E138 K139 K140 E141 K142 P143
Binding residue
(residue number reindexed from 1)		G1 K2 G3 K4 P5 R6 G7 L8 N9 S10 A11 R12 K13 L14 R15 V16 H17 R18 R19 N20 N21 W23 A24 E25 N26 N27 R31 L32 L33 G34 F37 K38 F42 S45 S46 H47 K49 G50 I51 K61 Q62 P63 N64 S65 A66 I67 R68 I76 K77 F85 V86 P87 N88 A89 D99 E100 V101 L102 L103 A104 G105 F106 R108 K111 A112 K113 G114 D115 I116 P117 G118 R120 F121 K122 V123 V124 K125 V126 S127 G128 V129 S130 L131 L132 A133 L134 W135 K136 E137 K138 K139 E140 K141 P142
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 01:44:51 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v92', asym_id = 'BX', bs = 'BS01', title = 'Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v92', asym_id='BX', bs='BS01', title='Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v92', asym_id = 'BX'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015935', uniprot='', pdbid='4v92', asym_id='BX')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>