Structure of PDB 4v92 Chain BU Binding Site BS01

Receptor Information
>4v92 Chain BU (length=104) Species: 28985 (Kluyveromyces lactis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKIS
TRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEV
VVAS
Ligand information
>4v92 Chain A2 (length=1764) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagac
guuugguucuauuuuguugguuucuaggaccaucguaaugauuaauaggg
acggucgggggcaucaguauucaauugucagaggugaaauucuuggauuu
auugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaau
caagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucuu
aaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugaccc
acucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguaug
gucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggagu
ggagccugcggcuuaauuugacucaacacggggaaacucaccagguccag
acacaauaaggauugacagauugagagcucuuucuugauuuugugggugg
uggugcauggccguucuuaguugguggagugauuugucugcuuaauugcg
auaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcugg
uuauccacuucuuagagggacuaucgguuucaagccgauggaauuugagg
caauaacaggucugugaugcccuuagacguucugggccgcacgcgcgcua
cacugacggagccagcgagucuaaccuuggccgagaggucuugguaaucu
uggaaacuccgucgugcuggggauagagcauuguaauuauugcucuucaa
cgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacguccc
ugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuuagug
aggccucaggaucugcuuagagaucucagagcggagaauuuggacaaacu
uggucauuuagaggaacuaaaagucguaacaagguuuccguaggugaacc
ugcggaaggaucau
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<..........<<.
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....<<<<<<......((((.{..<<.<..>.>>.............
.>>>>>>.........<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<......>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>.>>.........<<<....<<<
.....>>>..>>>.......>.>.....<..<<<<<<..<<....>>..>
>>>>>....>.....<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<<....<..>....>>>>>.>>>>>>.....<<<<<....<......<..
.....>......>....>>>>>....<<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>>........<<
...<<<<<<<.......}.))))..>>>>>>>..>>.....>>....<<<
<<<.<<...<<<<..<<<.<<<<<<.<...<<<......>>>......>.
>>>>>>.>>>.......<<....>>...>>>>...>>>>>.>>>...>>>
...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<.<<.<<<..<<<<<<<<..<<........>>.>>
>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......<
<<......>>>....>>>..)))).}...<<.<<<<<<<..<<.<<<<<.
...<<.<<<<<<......<<........>>..........<<<<<.....
.<<<<<........<<.<<<........>>>.>>......>>>>>...<<
.<<<..<<.<<.<<<....<<<.<<.<......>....<<<......>>>
...>>.>>>....<<<<..<<..<<<<..<<<<<.<..<<<....>>>..
>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>>>
....>>>..>>.....>>>>>>>.......>>>>>...>>.>>>>.>>..
....<<<<<<<......<<.....<<..<<<<....>>>>..>>....>>
......>>>>>>>...........<<<<<<..........>>>>>>....
.......>>>>>....<<<<<<<<.......>>>>>>>>......>>...
>>>>>>>>>...........<<.<..<<<<.<<....<<<<<<<<.<<<.
.<.<<..<....<<.<<<.<<....>>.>>>.>>....>..>>.>..>>>
.>>>>>>>>...>>.>>>>...>.>>..........<<<<<<<<....>>
>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4v92 Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		V31 E35 K52 K53 G54 P55 V56 R57 L58 P59 T60 V62 R68 K69 T70 P71 N72 G73 E74 G75 S76 K77 T78 W79 E80 T81 Y82 E83 R85 H87 K88 R89
Binding residue
(residue number reindexed from 1)		V15 E19 K36 K37 G38 P39 V40 R41 L42 P43 T44 V46 R52 K53 T54 P55 N56 G57 E58 G59 S60 K61 T62 W63 E64 T65 Y66 E67 R69 H71 K72 R73
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 21:36:34 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v92', asym_id = 'BU', bs = 'BS01', title = 'Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v92', asym_id='BU', bs='BS01', title='Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v92', asym_id = 'BU'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v92', asym_id='BU')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>