Structure of PDB 8q7z Chain BP Binding Site BS01

Receptor Information
>8q7z Chain BP (length=155) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDV
TLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESN
AELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT
EKEQI
Ligand information
>8q7z Chain B5 (length=3562) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgcggauccccgccuccgccgggcgggccggggaccgccgcccggccggc
guccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccgg
cuccgggacggcugggaagggcugccggcgggcagguggcccgggccggg
uguuauagccgccgggcccggaucgucgccgaaucccggggccgagggag
aggaccgccgccgcgcccucccucgggggacgggcccgccggcccccggc
gccgcuguccggggcggacugcgcucagugcgccccgaccggcggcgccg
ccgggccgggcucgggccacgccagggcgcccgggguccgcggcgacguc
ggcuacccacccgacccgucuugaaacacggaccaaggagucuagcacgc
gcgcgagucggcggcucgcgcgaaagcccgcggcgcaaugaaggugaggg
ccggcgcgcgccggcugaggugggaucccggggcggcaggccggaaggcc
ccgggcgcaccaccggcccgucucgcccgccucgccggggagguggagca
ugagcgcgcgugcuaggacccgaaagauggugaacuaugccugggcaggg
cgaagccagaggaaacucugguggagguccguagcgguccugacgugcaa
aucggucguccgacccggguauaggggcgaaagacuaaucgaaccaucua
guagcugguucccuccgaaguuucccucaggauagcuggcgcucggggcg
gcggugcaguuuuacccgguaaagcgaaugauuagaggucuuggggccga
aacgaucucaaccuauucucaaacuuucaauggguaagacgcccggcucg
cuggcguggagccgggccguggaaugcgagcgcucagugggccacuuuug
guaagcagaacuggcgcugcgggaugaaccgaacgccggguuaaggcgcc
cgaugccgacgcucaucagagcccagaaaagguguugguugaucuagaca
gcgccgaaucaacuagcccugaaaauggauggcgcuggagcgucgggccc
auacccggccgucgccggcggugcggagccgcgggggcuacgccgcgacg
aguaggagggccgcugcggugcgccuggaagccuggggcgcgggcccggg
uggagccgccgcaggugcagaucuuggugguaguagcaacuauucaaacg
agagcuuugaaggccgaaguggagcaggguuccaugugaacagcaguuga
acaugggucagucgguccuaagcgauaggcgagcgccguuccgaagggac
gggcgauggccuccguugcccucagccgaucgaaagggagucggguucag
auccccgaauccggagcggcggagacgggcgccgcgaggcgcccagugcg
guaacgcaagcgaucccggagaagccggcgggagccccggggagaguucu
cuuuucuuugugaagggccgggcgcccuggaacggguucgccccgagaga
ggggcccgcgccuuggaaagcgucgcgguuccggcggcguccggugagcu
cucgcuggcccgugaaaauccgggggagaggguguaaaucucgcgccggg
ccguacccauauccgcagcaggucuccaaggugaacagccucuggcaugu
uggaccaauguagguaagggaagucggcaagccggauccguaacuucggg
auaaggauuggcucuaagggcugguagcagccggcuuagaacuggugcgg
accaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcccgc
ggcggguguugacgcgaugugauuucugcccagugcucugaaugucaaag
ugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugacucu
cuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugg
augaacgagauucccacugucccuaucuacuauccagcgaaaccacagcc
aagggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcu
ugacucuagucuggcgcugugaagagacaugagagguguagaauaagugg
gaggccccggccgccggugaaauaccacuacucugaucguuuuuucacuu
acccggugaggcgggggggcgagccccgaggggcucucgcuucuggcgcc
aagcgcccggcgcgcgccgggcgcgacccgcuccggggacagcgucaggu
ggggaguuugacuggggcgguacaccugucaaagcguaacgcaggugucc
uaaggcgagcucagggaggccagaaaccucccguggagcagaagggcaaa
agcucgcuugaucuugauuuucaguacgaauacagaccgugaaagcgggg
ccucacgauccuucugacuuuuuggguuuuaagcaggaggugucagaaaa
guuaccacagggauaacuggcuuguggcggccaagcguucauagcgacgu
cgcuuuuugauccuucgaugucggcucuuccuaucauugugaagcagaau
ucaccaagcguuggauuguucacccacuaauagggaacgugagcuggguu
uagaccgucgugagacagguuaguuuuacccuacugaugauguguuguug
cgcuaguaauccugcucaguacgagaggaaccgcagguucagacauuugg
uguaugugcuuggcugaggagccacuggagcgaggcuaccaucuguggga
uuaugacugaacgccucuaagucagaauccccccuaaacguagcgauacc
gcagcgccgaggcgccucggugggcucgcgauagccggccgccgcccccc
ucgggcgggcggucggugcggagcgccgcucguggucgggaccggagcgc
ggacagauguggcgccgccucucccccgccgcguaccgcauguucguggg
gaacccggugcuaaaucauucguagacgaccugauucugggucgggguuu
cguacguagcagagcagcucgcugcgaucuauugagagucagcccucgac
acaagcuuuugu
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>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<<....>>>
>..................................<<<<<<<<..<<<.<
....<.<<<<<<<<<<.....<<<<<<<<<....<<<<<<<<<<...<<.
.<<<<.<<<<<<.<<<..<..>..>>>.>>>>>>>>>>..>>...>>>>.
..>>>>>>>>>>>>>>>......>>>>>>>.>>>.>...<<<<<<<<<<<
<<<<<<<<<<<<...<<.<<<<..<<<<<<<.......<<<<<<.>>>>>
>.......>>>>>>>>>>>......>>>>>>..>>>>>>>>>>>......
............<<<<<<<<<......>>><<<<<<..<<<<<<<.<<<<
<<<<<<<..<<<<<<<.<<<<....>>>>.>>>>>>>..>>>>>>>>>>>
..>>>>>>>.....>>>>.>>...>>>>>>.....>>>.>>>>>....>>
>>...>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<...<<<<........>>>>...>>>...<<....>>...<<
<<<<<....>>>>>>>..<<<<<...<<<<<<<<.............>>>
>>>>>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.
...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<
....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<.......
.>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>..
.>..>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......
.....<<<.<<<<<<<<<...<<<....<<<..<.<<<..<<<<<<....
.....>>>>>>>>>.>..>>>..>.>>...>>>>>>>...<<<<<<<<<.
<......>>>>>>>>>>.....>>>>>>>>>>>>..>>..<<<<.<<<<<
.....>>>>>.>>>>....<<<......>>>...<<<<<<<...<<<(((
.......<<<<<.....<<..........<<<.<<<<<<<<<<.......
<..>...>>>>>>>>>>>>>..........))).>>...>>>>>..>>>.
..>>>>>>><<<<<<.<<<......................>>>>>>>>>
....>>>>>>...<<<<<<<<.<<......<<<<<.<<<....>>>>>>>
>...>>>>>>>>>>........>>>>>><<.....<<.....<<<<<<..
.....>>>>>>.<<<.....<<<<..<<...<<<<<<...<<.....>>.
>>>>>>....((<<<<<<...<.....<<<....>>>..........<<.
<<<<<<<<<...>>>>>>>>>>>.......>....>>>..<<<<<.....
...>>>>>))<<<<....<<<<<...<<<<<<<....>>>>>>>...<<<
....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..{{
{..>>>>>>....<<<<<<<<<<.<<<<.....<<<.....>>>.....>
>>>>>>>>.>>>>>.....<<<<<<<.......>>>>>>>>>>>...>>>
>>>>>>>>>.........>>>>>>>..>..........>>.>>>.>>>>.
>>>..>>.....<<......>>.>>>>.<<<<.....>>>>..>>>....
<<<<.....<<<<<<<.<<...............<<<<<....<<..>>.
....>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>.......
.....<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<..
...>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<...<.
<<<<....>>>>.>...>>>.>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<.......>>>>>.....>.....>
>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<
<<<........>>>>>....[[[[[..{{{.{{......[[[[.{{[[[[
..<<<<<.<<<<<<<<<.<<<<<<<<<<...<<<<..........<<<<<
..<<<<..>>>>............>>>>>.>>>>....>>>>>>>>>>..
.<<<<<.....<<<<..<<.<<<<<<<..>>>>>>>>>............
..<<<<<<<<<<..>>>>>>>>>>..>>>>..>>>>>....>>>>>>>>>
..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<
...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.(((>>...
.>>>>>>>...<<<..<<<<.......>>>>..>>><<<<....>>>>>>
)))]......((((((..(((..>>>>>>.)))))))))..........]
]]]..}}]]]].......<<.<.<.<<<<<<...<<.......>>...>>
>>>>...>>.>.>.......<<<<<.<<<<<<..<.<.<<<<<......>
>>>>...>.>.<<<.........>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....}}..}}}.]]]]].....<<<<<<<
<..<<<..<.<<<<<.................>>>>>.><<<<....<<<
<...<<<.<<<<<<<}}}.>>>>>..>>.>>>..>>>>...>>>>.<<<<
...<<<<<...........>>>>>...>>>>..>>>...>>>>>>>>...
..<<<<<<<.<<..<<<<....<<<........<<<<<<<<<<..<<<..
..>>>..>>>>>>>>>>.......>>>...<<<<<<.<<<....<<<.<<
<<............>>>>>>>..>>>.>>>>>>..............>>>
>..>>>>>>>>><<<...<.............>....<<.<<<<<<<.<<
<....<<<<.<..<<<<<..>>>>>..>>>>>...>>>....>>>>.>>>
.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
V2 R3 Y4 K16 R18 G19 S20 R23 H25 F26 K27 R30 Q34 K37 K43 K46 Q56 R62 Y63 N64 G65 G66 G68 R69 A71 Q72 K74 Q75 W78 Q80 R82 W83 P84 K85 K86 N97 S100 N101 L104 Q118 V119 K121 R127 T129 Y130 R131 A132 H133 G134 R135 I136 N137 P138 Y139 M140 S141
Binding residue
(residue number reindexed from 1)
V1 R2 Y3 K15 R17 G18 S19 R22 H24 F25 K26 R29 Q33 K36 K42 K45 Q55 R61 Y62 N63 G64 G65 G67 R68 A70 Q71 K73 Q74 W77 Q79 R81 W82 P83 K84 K85 N96 S99 N100 L103 Q117 V118 K120 R126 T128 Y129 R130 A131 H132 G133 R134 I135 N136 P137 Y138 M139 S140
External links