Structure of PDB 4v92 Chain BP Binding Site BS01

Receptor Information
>4v92 Chain BP (length=115) Species: 28985 (Kluyveromyces lactis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLR
AAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEM
LGHYLGEFSITYTPV
Ligand information
>4v92 Chain A2 (length=1764) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagac
guuugguucuauuuuguugguuucuaggaccaucguaaugauuaauaggg
acggucgggggcaucaguauucaauugucagaggugaaauucuuggauuu
auugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaau
caagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucuu
aaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugaccc
acucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguaug
gucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggagu
ggagccugcggcuuaauuugacucaacacggggaaacucaccagguccag
acacaauaaggauugacagauugagagcucuuucuugauuuugugggugg
uggugcauggccguucuuaguugguggagugauuugucugcuuaauugcg
auaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcugg
uuauccacuucuuagagggacuaucgguuucaagccgauggaauuugagg
caauaacaggucugugaugcccuuagacguucugggccgcacgcgcgcua
cacugacggagccagcgagucuaaccuuggccgagaggucuugguaaucu
uggaaacuccgucgugcuggggauagagcauuguaauuauugcucuucaa
cgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacguccc
ugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuuagug
aggccucaggaucugcuuagagaucucagagcggagaauuuggacaaacu
uggucauuuagaggaacuaaaagucguaacaagguuuccguaggugaacc
ugcggaaggaucau
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<..........<<.
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....<<<<<<......((((.{..<<.<..>.>>.............
.>>>>>>.........<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<......>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>.>>.........<<<....<<<
.....>>>..>>>.......>.>.....<..<<<<<<..<<....>>..>
>>>>>....>.....<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<<....<..>....>>>>>.>>>>>>.....<<<<<....<......<..
.....>......>....>>>>>....<<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>>........<<
...<<<<<<<.......}.))))..>>>>>>>..>>.....>>....<<<
<<<.<<...<<<<..<<<.<<<<<<.<...<<<......>>>......>.
>>>>>>.>>>.......<<....>>...>>>>...>>>>>.>>>...>>>
...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<.<<.<<<..<<<<<<<<..<<........>>.>>
>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......<
<<......>>>....>>>..)))).}...<<.<<<<<<<..<<.<<<<<.
...<<.<<<<<<......<<........>>..........<<<<<.....
.<<<<<........<<.<<<........>>>.>>......>>>>>...<<
.<<<..<<.<<.<<<....<<<.<<.<......>....<<<......>>>
...>>.>>>....<<<<..<<..<<<<..<<<<<.<..<<<....>>>..
>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>>>
....>>>..>>.....>>>>>>>.......>>>>>...>>.>>>>.>>..
....<<<<<<<......<<.....<<..<<<<....>>>>..>>....>>
......>>>>>>>...........<<<<<<..........>>>>>>....
.......>>>>>....<<<<<<<<.......>>>>>>>>......>>...
>>>>>>>>>...........<<.<..<<<<.<<....<<<<<<<<.<<<.
.<.<<..<....<<.<<<.<<....>>.>>>.>>....>..>>.>..>>>
.>>>>>>>>...>>.>>>>...>.>>..........<<<<<<<<....>>
>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4v92 Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		P38 A39 R40 V41 R43 R44 R47 P53 G55 F56 M57 K58 K59 L60 R61 A62 A63 K64 L65 A66 A67 K72 P73 A74 P75 V76 R77 T78 H79 M80 R81 N82 M83 I84 E88 M89 S92 V93 V94 G95 I96 Y97 N98 G99 K100 A101 F102 N103 Q104 V105 I107 Y115 L116 G117 E118 F119 S120 I121 T122 Y123 T124 P125 V126
Binding residue
(residue number reindexed from 1)		P27 A28 R29 V30 R32 R33 R36 P42 G44 F45 M46 K47 K48 L49 R50 A51 A52 K53 L54 A55 A56 K61 P62 A63 P64 V65 R66 T67 H68 M69 R70 N71 M72 I73 E77 M78 S81 V82 V83 G84 I85 Y86 N87 G88 K89 A90 F91 N92 Q93 V94 I96 Y104 L105 G106 E107 F108 S109 I110 T111 Y112 T113 P114 V115
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 01:56:59 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v92', asym_id = 'BP', bs = 'BS01', title = 'Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v92', asym_id='BP', bs='BS01', title='Initiation of Translation by Cricket Paralysis V... Ires Requires its Translocation in the Ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v92', asym_id = 'BP'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v92', asym_id='BP')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>