Structure of PDB 6eri Chain BM Binding Site BS01

Receptor Information
>6eri Chain BM (length=111) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDE
LLQVRDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRT
KNNCRTLKRGK
Ligand information
>6eri Chain BA (length=1481) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuu
aacacaugcaagucggacgggaagugguguuuccaguggcggacggguga
guaacgcguaagaaccugcccuugggaggggaacaacagcuggaaacggc
ugcuaauaccccguaggcugagaagcaaaaggaggaauccgcccgaggag
gggcucgcgucugauuagcuaguuggugagguaauagcuuaccaaggcga
ugaucaguagcugguccgagaggaugaucagccacacugggacugagaca
cggcccagacuccuacgggaggcagcaguggggaauuuuccgcaaugggc
gaaagccugacggagcaaugccgcguggaggcagaaggcccacgggucgu
gaacuucuuuucccggagaagaagcaaugacgguauccggggaauaagca
ucggcuaacucugugccagcagccgcgguaagacagaggaugcaagcguu
auccggaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgc
cgucaaaucccagggcucaacccuggacaggcgguggaaacuaccaagcu
ggaguacgguaggggcagagggaauuuccgguggagcggugaaaugcgua
gagaucggaaagaacaccaacggcgaaagcacucugcugggccgacacug
acacugagagacgaaagcuaggggagcgaaugggauuagauaccccagua
guccuagccguaaacgauggauacuaggcgcugugcguaucgacccgugc
aguguuguagcuaacgcguuaaguaucccgccuggggaguacguucgcaa
gaaugaaacucaaaggaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccg
cgaauccucuugaaagagaggggugccuucgggaacgcggacacaggugg
ugcauggcugucgucagcucgugccguaagguguuggguuaagucccgca
acgagcgcaacccucguguuuaguugccaacguugaguuuggaacccuga
acagacugccggugauaagccggaggaaggugaggaugacgucaagucau
caugccccuuaugcccugggcgacacacgugcuacaauggccgggacaaa
gggucgcgaucccgcgagggugagcuaaccccaaaaacccguccucaguu
cggauugcaggcugcaacucgccugcaugaagccggaaucgcuaguaauc
gccggucagccauacggcggugaauucguucccgggccuuguacacaccg
cccgucacacuaugggagcuggccaugcccgaagucguuaccuuaaccgc
aaggagggggaugccgaaggcagggcuagugacuggagugaagucguaac
aagguagccguacuggaaggugcggcuggau
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<..
.....<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>
>>......>>>>....<<<....>>>....<<......>>.>>>>>>>.>
>>.>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>..
....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.......
..>>>>>>.<<<<<..>>>>>...>>>>>>.........<<<....<<<<
....>>>>..>>>..>>.>>>>>>..<<<<......<<<<<..>>>>>..
...>>>>....<<<<<<..................>>>>>>......<<<
<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>
>>>>..........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<
<<<<.....<<<<<<.....>>>>>>...>>>>>>>>..>>>>..>>>>.
..<<<.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>...
...>>>>>>>.>..........<<....>>.>>>>>>>..>>>>..>>>.
..>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>..........<<<<<<..<<<<<<<<<<<........>>>>>
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....
>>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<
<..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..
>>>>>>.....<<<<.<<<<<<<...<<<<........>>>>....>>>>
>>>.....<<<<<.....>>>>>........>>>>.........>>>...
>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....
<<<..<<...<<<....>>>...>>....>>>.....>>>>.>>......
<....<<<<<<<........>>>>>>>....>.....>>>>>>....<<<
<<<<..........>>>>>>>......>>...>>>>>>>>>>.>>....<
..<<...<<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<..
..>>.>>>>>>>>.>...>>>>.>>>>>>>..>>>.>>>>....>>...>
.....<<<<<<<<<....>>>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6eri Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		K59 R60 Y63 H69 G70 I71 G72 S74 R75 Y131 R135 P141 C142 R143 Q145 R146 T147 K148 N149 N150 C151 R152 T153 K155 R156
Binding residue
(residue number reindexed from 1)		K12 R13 Y16 H22 G23 I24 G25 S27 R28 Y84 R88 P94 C95 R96 Q98 R99 T100 K101 N102 N103 C104 R105 T106 K108 R109
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6eri, PDBe:6eri, PDBj:6eri
PDBsum6eri
PubMed29610536
UniProtP82163|RR13_SPIOL Small ribosomal subunit protein uS13c (Gene Name=RPS13)

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