Structure of PDB 8cq7 Chain BL Binding Site BS01

Receptor Information

>8cq7 Chain BL (length=185) Species: 5476 (Candida albicans)

GRDHTSKQHVRSGHRTAPKSDNVYLQLLVKLYSFLARRTDAPFNKVILKS
LFLSKINRPPVSVSRISRALKQKGAAEKTIVVVGTVTDDNRLLEFPKATI
AALRFTAGAKDRILKNGGEAITLDQLALRAPKGQNTLIVRGPRNSREAVR
HFGFGPHKGKAPRILSKGRKFERARGRRRSRGFKV

Ligand information

>8cq7 Chain AS (length=3222)

ugaccucaaaucagguaggacuacccgcugaacuuaagcauaucaauaag
cggaggaaaagaaaccaacagggauugccucaguagcggcgagugaagcg
gcaaaagcucaaauuugaaaucuggcgucuuuggcguccgaguuguaauu
ugaagaagguaucuuugggcccggcucuugucuauguuccuuggaacagg
acgucacagagggugagaaucccgugcgaugagaugacccgggucugugu
aaaguuccuucgacgagucgaguuguuugggaaugcagcucuaagugggu
gguaaauuccaucuaaagcuaaauauuggcgagagaccgauagcgaacaa
guacagugauggaaagaugaaaagaacuuugaaaagagagugaaaaagua
cgugaaauuguugaaagggaagggcuugagaucagacuugguauuuugca
ugccgcugcgguuuaccgggccagcaucgguuuggagcggcaggauaaug
gcggaggaauguggcacggcuucugcuguguguuauagccucugacgaua
cugccagccuagaccgaggacugcgguuuuuaccuaggauguuggcauaa
ugaucuuaagucgcccgucuugaaacacggaccaaggagucuaacgucua
ugcgaguguuuggguguaaaacccguacgcguaaugaaagugaacgaagg
ugggggcccauuagggugcaccaucgaccgauccugauguguucggaugg
auuugaguaagagcauagcuguugggacccgaaagauggugaacuaugcc
ugaauagggugaagccagaggaaacucugguggaggcucguagcgguucu
gacgugcaaaucgaucgucgaauuuggguauaggggcgaaagacuaaucg
aaccaucuaguagcugguuccugccgaaguuucccucaggauagcagaag
cucguaucaguuuuaugagguaaagcgaaugauuagaagucuugggguug
aaaugaccuuaacuuauucucaaacuuuaaauauguaagaaguccuuguu
gcuuaauugaacguggacaauugaaugaagagcuuuuagugggccauuuu
ugguaagcagaacuggcgaugcgggaugaaccgaacgugaaguuaaagug
ccggaaugcacgcucaucagacaccacaaaagguguuaguucaucuagac
agccggacgguggccauggaagucggaauccgcuaaggaguguguaacaa
cucaccggccgaaugaacuagcccugaaaauggauggcgcucaagcgugc
uacuuauacuucaccgugauugcuguuuugacgcuuucacgaguaggcag
gcguggaggucagugacgaagccuuugcuguaaagcugggucgaacggcc
ucuagugcagaucuuggugguaguagcaaauauucaaaugagaacuuuga
agacugaaguggggaaagguuccaugucaacagcaguuggacauggguua
gucgauccuaagagauggggaagcuccguuucaacgugcuugauuuuuca
ggccaaccaucgaaagggaauccgguuaaaauuccggaacuuggauaugg
auucuucacggcaacguaacugaauguggagacgucggcgugagcccugg
gaggaguuaucuuuucuucuuaacagcuuaucacccuggaauugguuuau
ccggagauggggucuuauggcuggaagagcgcgguaauuuugccgcgucc
ggugcgcuuacgacgguccuugaaaauccacaggaaggaauaguuuucau
gccaagucguacucauaaccgcagcaggucuccaagguuaacagccucua
guugauagaauaauguagauaagggaagucggcaaaauagauccguaacu
ucgggauaaggauuggcucuaaggaucgguaacgaucaacuuagaacugg
uacggacaaggggaaucugacugucuaauuaaaacauagcauugugaugg
ucagaaagugauguugacacaaugugauuucugcccagugcucugaaugu
caaagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaug
acucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaug
aauggauuaacgagauucccacugucccuaucuacuaucuagcgaaacca
cagccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguu
gagcuugacucuaguuugacauugugaaaagacauggaggguguagaaua
agugggagcuucggcgccggugaaauaccacuaccucuauaguuuuuuua
cuuauucaaugaagcggagcuggaggucaaacuccacguucuagcauuaa
gcccucugggcgauccggguugaagacauugucagguggggaguuuggcu
ggggcggcacaucuguuaaacgauaacgcagguguccuaagggggacuca
uggagaacagaaaucuccaguagaacaaaaggguaaaaguccccuugauu
uugauuuucagugugaauacaaaccaugaaaguguggccuaucgauccuu
uagucccucggaauuugaggcuagaggugccagaaaaguuaccacaggga
uaacuggcuuguggcagucaagcguucauagcgacauugcuuuuugauuc
uucgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguug
gauuguucacccacuaauagggaacgugagcuggguuuagaccgucguga
gacagguuaguuuuacccuacugaugaauguuaucgcaauaguaauugaa
cuuaguacgagaggaaccguucauucagauaauugguuuuugcggcuguc
ugaucaggcaacgccgcgaagcuaccaucugcuggauuauggcugaacgc
cucuaagucagaauccaugcuagaacgcgaugauuuuugcccugcacauu
uuagauggauacgaauaagacuuuuuagucgcuggaccauagcaggcugg
caacggugcgcuuagcggaaaggcuuugugcgcuugccggcggauagcaa
ugucaacaugcgcggggauaaauccuuugcauacgacuuagauguacaac
ggaguauuguaagcaguagaguagccuuguuguuacgaucugcugagauu
aagcucuuguugucugauuugu

.......................<<<<<<.....<......>......>>
>>>.>.........<<....>>..<<<<<......<<.....>>.....>
>>>>..<<<...........<<.<<<<<<...>>>>>>.>>.........
....<<<<<...<<<<<<<<<<<<.<<<<<<<.....<<<<......>>>
>.(.......<<<......)>>>....>>>>>>>....>>>>>>>>....
>>>>..>>>>>........<<<<<<<........>>>>>>>.....<<<<
<..((((((>>>>>..>>>...............................
...<<....>>...............<<<<....>>>>............
......................<<<<<<<<<<<<.....<<<<...<<<<
......>>>>...>>>>..<<<<<<<.<<<<<<<<.<<<<<<<....<<.
<<<<<<<......<<<<<<......>>>>>>.......>>>>>>.>.>>.
>>>>>.>>>>>>>>>>........<<<....>>>.....>>>>>>>....
>>>>>>>>>>>>..<<<<........>>>><<<<<<....<<<<<<.<<<
<<<..<<<..<<<<<.....>>>>>..>>>...<<....>>.......<<
<<<..<<<<....>>>>...>>>>>.<<<<<<<<...<<....>>...>>
>.>>>.>>....>>>>>>.>>>>>>..<<.<..<<<<<<<.....<<<<<
<<<<..<<<....<<<<<<<....>>>>>>>.....>>>...<<<..<<.
<<........>>>>.>>>....>>>>>>>>>...<<.......>>.....
.>>>>>>...>..>.>>..<<<<<<....<.<<<....>>>.><<<<<<<
<<<...<<<.<<<<<<<.....<<<....<<<....<<<<...<<<<<..
.....>>>>>.>>>>....>>>..>.>>.....>>>>>...<<<<.<<<<
.<......>>>>>.>>>>.....>>>>>.>>>>>>>>.>>..<<<<.<<<
<<.....>>>>>.>>>>....<<<......>>>...<<<<<<<..<<<<(
((.....<<<<<<.....<<..........<<<.<<<<<<<<<<......
.<<<<<.<<<...<<.........>>...>>>.........<<......>
>...>>>>>...>>>>>>>>>>>>>..........))).>>...>>>>>>
.>>>>..>>>>>>><<<<<..<<.........>>..>>>>>....>>>>>
>..<<<<<<<<.<<......<<<<..<<<....>>>.>>>>...>>>>>>
>>>>........>>>>>><<.....<<.....<<<<<<.......>>>>>
><<<<.....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....
((<<<<<<...<<....<<<....>>>..........<<<<<<....>>>
>>>......>>....>>...<<<<<........>>>>>))<<<<.<<<<<
<<.....<<<....>>>......{<<<<<<...<<<<.<<<<<<<.<<<<
<<<<<<..[[[..>>>>>><...<<<<<....<<<<<<....<<<.....
>>>....>>>>>>.....>>>>>....><<<<<<<......>>>>>>>>>
>>...>>>>>>>.>>>>.........>>>>>>..........>>>..>>>
>>>>>>>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>
>>>..<<<<.....<<<<<<<.<<.........<.....<<<<<......
.........>>>>><<.<<<<<<<<<<<....>>>>>..>>>>>>.>>..
..........<<<<<<<<<..<<<.........>>>..<<<<<<<....<
<<<.....>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<
.....<<<<....>>>>.....>>>.>>>>..>>>>><<<<<<.......
>>>>>>........<...........<<<<<.......>>>>>.....>.
....>>....>>.>>>>>>>..>..>>.>>>>>>>..>>>>>>....>>.
...<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<
<<<<<..<<<<<.<<<<<<<<..<<<<<<<<<<<<...<<..........
.......<......>....................>>.>>.>>>>>>>>>
>...<<<<<.....<<<<..<<<<<......>>>>>..........}...
<<<<...>>>>..>>>>..>>>>>.....>>>>>>>>..>>>>>...<<<
.....>>>..<<<<<<...........>>>>>>..<<...<<<<<<<...
<<<<<<.......>>>>>>.....<<...(((>>....>>>>>>>...<<
<.<<<<<.......>>>>.>>>>.<<<....>>>.>>)))......<<<<
<<<..<<<<.))))))>>>>>>>>>>>.........>>>>..>>>>>>..
.....<<.<...<<<<<<...<<.......>>...>>>>>>....>.>.>
.......<<<<<.<<<<<<..<.<<<<<<<......>>>>>>>...>.<<
<.........>>>.....>>>>>..>...>>>.>>....<<<<<<<....
>>>.>>>>....>>..>>>.>>>>>....<<<<<<<<..<<<<.<.<<<<
<.................>>>>>.><<<<<...<<<<....<<<<<<<<<
<]]].>>>>>..>>>>>...>>>>..>>>>>.<<<<...<<<<<......
.....>>>>>...>>>>.>>>>....>>>>>>>>.....<<<<<<.<<<.
......<<..........<<<<....>>>>......>>.......<<<<<
<...<<<<<<<..<<<......>>>..>>>>>>>.>>>>>>.........
.......>>>.>>>>>>..<<<<<<<.............>>....<<<<<
<<<<.<<<....<<<<....<<<<<......>>>>>...>>>>...>>>.
...>>>>.>>>>>..>>>>>..

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8cq7 Drug-induced rotational movement of the ribosome is a key factor for read-through enhancement
• Resolution: 3.2 Å
• Binding residue (original residue number in PDB): G2 R3 H5 K8 Q9 H10 V11 R12 S13 G14 H15 R16 K20 S21 Q27 K31 F35 R38 R39 P43 F44 L54 S55 K56 I57 N58 P61 S63 S65 R66 R69 K72 Q73 K79 T86 T88 D89 D90 N91 R92 L93 R105 T107 A108 Q135 N136 T137 I139 R141 G142 R144 N145 S146 R147 E148 R151 F153 P157 H158 G160 K161 A162 P163 R164 S167 K168 R170 K171 F172 R174 R176 R178 R179 S181 R182 F184 K185
• Binding residue (residue number reindexed from 1): G1 R2 H4 K7 Q8 H9 V10 R11 S12 G13 H14 R15 K19 S20 Q26 K30 F34 R37 R38 P42 F43 L53 S54 K55 I56 N57 P60 S62 S64 R65 R68 K71 Q72 K78 T85 T87 D88 D89 N90 R91 L92 R104 T106 A107 Q134 N135 T136 I138 R140 G141 R143 N144 S145 R146 E147 R150 F152 P156 H157 G159 K160 A161 P162 R163 S166 K167 R169 K170 F171 R173 R175 R177 R178 S180 R181 F183 K184

External links

• PDB: RCSB:8cq7, PDBe:8cq7, PDBj:8cq7
• PDBsum: 8cq7
• UniProt: A0A8H6C4Y1