Structure of PDB 4v7h Chain BH Binding Site BS01

Receptor Information
>4v7h Chain BH (length=179) Species: 5541 (Thermomyces lanuginosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKV
AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVE
KDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS
QNAADLQQICRVRNKDIRKFLDGIYVSHK
Ligand information
>4v7h Chain B5 (length=3170) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuugaccucaaacagguaggaguacccgcugaacuuaagcauaucaaua
agcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaag
cggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaa
uuuggagagggcaacuuuggggccguuccuugucuauguccuuggaacag
gacgucauagggggugagaaucccgugugcgaggagugcgguucuuugua
aagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggug
gaaauucaucuaaagcuaaauauuggcgagagaccgauagcgaacaagua
cagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgu
gaaauuguugaaagggaagggcauuugaucacaugguguuuugugcccuc
ugcuccuuguggguaggggaaucucgcauuucacugggccagcaucaguu
uugguggcaggauaaacccauaggaauguagcuugccucgguaaguauua
uagccugugggaauacugccagcugggacugagugaaaugacguaaguca
aggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaa
ggagucuaacgucuaugcgaguguuuggguaaaccauacgcguaaugaaa
gugagcguagguuggggccucgcaagaggugcacaaucgaccgauccuga
ugucuucggauggauuugaguaagagcauagcuguugggacccgaaagau
ggugaacuaugccugaauagggugaagccagaggaaacucugguggaggc
ucguagcgguuugacgugcaaaucgaucgucgaauuuggguauaggggcg
aaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccuca
ggauagcacgaagcucguuuuaugagguaagcaaugauuagaggucgggg
ucgaaagaccuugaccuauucucaaacuuuaaauauguaagaaguccuug
uuacuuaauugaacguggacauuugaaugagagcuuuuagugggccauuu
uugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggu
gccggaauacacgcucaucaacaaaagguguuaguucaucuagacagccg
gacgguggccauggaagucggaauccgcuaaggaguguguaacaacucac
cggccgaaugaacuagcccugaaaauggauggcgccaagcguguuaccua
uacucuaccgucagggugcccugacgaguaggcaggcguggaggucguga
cgaagccugaccguaaggucgggucgaacggccucuagugcagaucuugg
ugguaguagcaaauauucaaaugagaacuuugaagacugaagggggaaag
guuccacgucaacagcaguuggacguggguuagucgauccuaagagaugg
ggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaggga
auccgguuaagauuccggaaccuggugguucuucacgguaacguaacuga
auguggagacgucgcgagcccugggaggaguuaucuuuucuucuuaacag
cuuaucacccgaauugguuuauccggaauggggucuuauggcuggaagag
gccagcaccuuugcuggcuccggugcgcuugacggccgugaaaauccaca
ggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuc
caaggugaacagccucuaguugauagaauaaugugauaagggaagucggc
aaaauagauccguaacuucgggauaaggauuggcucuaaguuagaacugg
uacggacaaggggaaucugacugucuaauuaaaacauagcauugcgaugg
ucaaaagugauguugacgcaaugugauuucugcccagugcucgaauguca
aagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugac
ucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaa
uggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccaca
gccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguuga
gcuugacucuaguuugacauugugaagagacauagaggguguagaauaag
ugggagcuucggcgccagugaaauaccacuaccuuuauguuucuuuacuu
auucaaugaagcggagcuggaauuaauuuuccacauccuuguguauaggg
ucccauucggggcugauccggguugaagacauugucagguggggaguuug
gcuggggcggccaucuguuaaacgauaacgcagauguccuaaggggggcu
cauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuuga
uuuugauuuucgugugaauacaaaccaugaaaguguggccuaucgauccu
uuagccucgaauuugaggcuagaggugccagaaaaguuaccacagggaua
acuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuu
cgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguugga
uuguucacccacuaauagggaacgugagcuggguuuagaccgucgugaga
cagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacu
uaguacgagaggaacaguucauucggauaauugguuuuugcggcugucug
aucaggcauugccgcgaagcuacauccgcuggauuauggcugaacgccuc
uaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaaua
uguaccuuuuguauaauggcguccuuguggcgucuaccuuuuguauaaug
cuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgugaa
auugaacuauuuugcguggggaaaaucauuuguauacgacuuagauguac
aagggguauuguaagcaguagaguagccuuguuguuacgaucugcugaga
uuaccuuuugucugauuugu
.........................<<<<<<...................
>>>>>..>........<<....>>...<<<<......<<.....>>....
.>>>>...<<<....<......<<.<<<<<<...>>>>>>.>>......>
.......<<<<<<.<<<<<<<<<<<<<<<<<<<.....<<<<......>>
>>.((......<<<.....))>>>....>>>>>>>..>>>>>>>>....>
>>>>>>>>>.........<<<<..............>>>>.....<<<..
.(((....>>>..>>>..................................
<<....>>...............<<<<....>>>>...............
...................<<<<<..<.<......<<<...<.....<(<
<<<<<.....>>>>>>>.)........>...>>>......<<<<<<<<<<
<.<<<<<<<<........<<<<<<......<<<<<<<..>>>>>>>....
...>>>>>>......>>>>>.>>>.>>>>>>>.......<<<....>>>.
....>>>>.........>.>..>>>>>...<<<........>>>..<<<<
<......<<<<.<<<<<<....<(.<<<.....>>>..>)..........
.........<<<<<....<<<....>>>.....>>>>>.<<<<<<<<...
<<....>>...>>>.>>>.>>....>>>>>>.>>>>....<<.<...<<<
<<<.....<<<<<<<<<...<.....<<<<<<<....>>>>>>>......
>....<<<<.<<<<........>>>>>>>>....>>>>>>>>>....<..
.....>.......>>>>>>......>.>>..<<<<<<......<<<....
>>>..<<..<.<......<<<<<<...<<<<...<<...<.<<..<<<<<
<<....>>>>>>>..>>.>...>>..>>.>>....>>>>>>...<<<.<<
<..<......>.>>>.>>>...............>>...>>..<<<<.<<
<.........>>>.>>>>....<<<......>>>...<<<<<<...<<<<
((......<<<<<.<..........<<<..<<<<<<<<<.......<<<.
..<<....<<.........>>....>>.........<<......>>....
.>>>...>>>>>>>>>.>>>...........)).....>>>>>>.>>>>.
..>>>>>><<.<<<<....>>>>.>>....>>>>>>...<<<...<<<..
....<<<<<<<......>>>>>>>...>>>...>>>.........>>>>>
........<<.....<<<<<<.......>>>>>>.<<<<...<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....<<((....<......<.<
<<....>>>>.......<<<<<<........>>>>>>.........>...
..<<<<........>>>>.>><<<<<<<......<<<....>>>......
..........<<<<...<...<.<<<<<<......[..>>>>>><..<<<
<............<.<.......>.>..............>>>>....>.
.<<<<<<....>>>>>>....>.....>....>>>>..............
..............>>>>.>.>>..))..>>.....<<......>>.>>>
>.<<<<.....>>>>.>>>>.....<<.....<.<<<<.<<.........
......<<<<<...............>>>>>.<.<<<.....>>>..>..
..........<<<<<<<<...<<<.........>>>..<<..<<<.....
<<<....>>>.......>>>..>>....<...<<..<<<<<<<....<..
....................>..>>>>>..>>>>.<<<<<.........>
>>>>........<.................................>...
..>......>.>>>>>>>.....>>.>>>>..>..>>..>>.........
.<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<.
.<<..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<...............
.<<......................>>.......>>>>>>>>>>>>>>..
.<<<<......<<<<...<<<<......>>>>..................
<<<......>>>....>>>>...>>>>.....>>>>>>>>..>>>>>...
<<<.....>>>...<<<<...........>>>>.........<.<<<<<.
..<<<<<<.......>>>>>>.....<<..[.((>>....>>>>.>>...
<<<...<<<......>>>...>>>..............))].........
<<<<..<....)))..>.>>>>............>>....>>>>>>....
....<.....<<<<<....<<.......>>....>>>>>......>....
.......<<<...<<<<..<.<<<<<<<......>>>>>>>...>.<<<.
........>>>.....>>>>.......>>>.......<<<<<<<....>>
>.>>>>....>>..>>>.>>>>>......<<<......<<<...<<<<<.
................>>>>>...<<<.....<.<..<<<<<<...<<<.
]..>>>.....>>>>>>.>.>...>>>...<<....<<<<<.........
..>>>>>....>>..>>>........>>>...........<.<<.<<<..
...................<<<.......>>>.................<
<<<<<<<..<<<...<.<<........>>..>..>>>>>>>>>>>.....
..........>>.>.>>>.....<<<..<..<.......>..>......<
<<<<<<.<<.....<<<<....<<<<<......>>>>>...>>>>....>
>..>>>>>>>....>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7h Comprehensive molecular structure of the eukaryotic ribosome.
Resolution8.9 Å
Binding residue
(original residue number in PDB)
R23 K36 N37 L38 K39 H40 R62 K63 A66 A67 R69 T70 S73 L74 N77 Y88 H96 F97 L118 G119 K121 K122 R124 R129 V151 S155 Q156 A159 Q162 Q163 R166 R168 N169 K170 R173 K174 F175 K184
Binding residue
(residue number reindexed from 1)
R18 K31 N32 L33 K34 H35 R57 K58 A61 A62 R64 T65 S68 L69 N72 Y83 H91 F92 L113 G114 K116 K117 R119 R124 V146 S150 Q151 A154 Q157 Q158 R161 R163 N164 K165 R168 K169 F170 K179
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Tue Nov 26 16:01:08 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'BH', bs = 'BS01', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='BH', bs='BS01', title='Comprehensive molecular structure of the eukaryotic ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0019843', uniprot = '', pdbid = '4v7h', asym_id = 'BH'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0019843', uniprot='', pdbid='4v7h', asym_id='BH')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>