Structure of PDB 8jiw Chain BF Binding Site BS01

Receptor Information
>8jiw Chain BF (length=178) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GDVKLFNRWTFEDVQVSDISLNDYLAVTSMKHYTFLPHSAGRYSAKRFRK
AQCPIIERLTNSLMMHGRNNGKKIMAVRIIKHTMEIIHLLTDANPIQIIV
DAIINSGPREDATRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAE
CLADELINAANSYAIKKKDEIERVAKAN
Ligand information
>8jiw Chain Ad (length=1571) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguacguacucggauaaccguaguaa
uucuagagcuaauacgugcaacaaaccccgacugggcgcauuuauuagau
augauccgaugauucaugauaacucgacggaucgcacggccgccggcgac
gcaucauucaaauuucugcccuaucaacuuucgaugguaggauaggggcc
uaccaugguggugacgggugacggagaauuaggguucgauuccggagagg
gagccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaau
uacccaauccugacacggggagguagugacaauaaauaacaauaccgggu
gucugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauu
ggagggcaagucuggugccagcagccgcgguaauuccagcuccaauagcg
uauauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgg
caucguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccaugaguaaugauuaaua
gggacagucgggggcauucguauuucauagucagaggugaaauucuugga
uuuaugaaagacgaacaacugcgaaagcauuugccaaggauguuuucauu
aaucaagaacgaaaguugggggcucgaagacgaucagauaccguccuagu
cucaaccauaaacgaugccgaccagggaucggcggauguugcaggacucc
gccggcaccuuaugagaaaucaaagucuuuggguuccggggggaguaugg
ucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggcgug
gagccugcguuugaccaacacggggaaacuuaccgguccagacaagcaga
cugagagcucuuucuaugggugguggugcauggguucuuaguugguggag
cgauuugucugguuaauuccguuaacgaacgagaccucagccugcuaacu
agcuaugcggagcccuccgcagcuagcuucuuagagggacuaucgccguu
uaggcgacggaaguuugaggcaauaacaggucugugaugcccuuagaugu
ucugggccgcacgcgcgcuacacugauguauucaacgaguauauagccuu
ggccgacaggcccggguaaucuuggaauuucaucgugauggggauagauc
auugcaauuggucuucaacgaggaaugccuaguaagcgcgagucaucacu
cgcguugacuacgucccugcccuuuguacacaccgcccgucgcuccuacc
gauugaaugguccggugaaguguucggaucgcggucgcgagaaguccauu
gaaccuuaucauuuagaggaaggagaagucguaacaagguuuccguaggu
gaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.........<<.....<..<<<...
..>>>..>......>>.........<<<.....>>>.....<<<<<<...
................>>>>>>.........<<<<.<<<<.>>>>>>>>.
.>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>
>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<
.<<<..........>>>.>>.<.<<....>>.>...>>>>>>........
.<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<<<.
.>>>>>>>.>>>......<<<.<...........>>.>>.........<<
<<<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>
>>>>>>..........<.<((.....<.<<...<<<.<............
....<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>........<<<<...>>>>......>....
<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<......>>>.....
.>>>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...
>>>...>>.>....<<<<<<<...<...<<<<.........>>>>...>>
>>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<....>>>>>>
>>>>>..>>>...<<..))>>...>>.....>>>.>.>.<<<......<<
<<....>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<.
.<<<.<<<<..<<.......>>..........<<<<......<<<<.<<.
.......>>....>>.>>...<<.<<<..<<.........<<<.<<<<..
....>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<<..
<<<<.<<<<<<<..>>>>>>>...>>>>..>>>>.>>.....<<<<<...
..>>>>>........>>>>>................>>>>>>>.......
>>.>>......>>>>.>>>.....<<<<.<.......<<.......<<<.
<<<<....>>>>.>>>....>>......>.>>>>......<....<<<<<
<.......>>>>>>....>.....>>>>>>....<<<<<<<<......>>
>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<<.<<
....<<<<<<<..<<<..<<<<..<...<<<<<..>>>>>...>..>>>>
..>>>..>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<<<<<.
...>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jiw Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes.
Resolution2.88 Å
Binding residue
(original residue number in PDB)		H62 R66 S68 K70 R71 K74 N85 M88 H90 G91 R92 N93 N94 G95 K97 I98 M99 N159 R170 F174 R175 V177 T179 I180
Binding residue
(residue number reindexed from 1)		H38 R42 S44 K46 R47 K50 N61 M64 H66 G67 R68 N69 N70 G71 K73 I74 M75 N127 R138 F142 R143 V145 T147 I148
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8jiw, PDBe:8jiw, PDBj:8jiw
PDBsum8jiw
PubMed38458197
UniProtW5D067

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