Structure of PDB 4v6t Chain BF Binding Site BS01

Receptor Information
>4v6t Chain BF (length=177) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
Ligand information
>4v6t Chain AV (length=334) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcgcuuuagcagcuuaauaaccug
cuuagagcccucucucccuagccuccgcucuuaggacggggaucaagaga
ggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcgu
uaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggc
aagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauu
ucggacgcggguucaacucccgccagcuccacca
<<<<<<..............<<<<<<<<.<.....<<..<<<.<<<<<<<
<<<.(((((...>>>>>......)))))<<<<<<.<<<.........>>>
..>>>>>>.<<<<<.<<<<..<<<...(((((>>>..>>>>.....>>>>
>...........)))))...<<<<...<<<<..((((..>>>>...>>>>
............))))...<<<<<<<<..<<<..[[.(((>>>..>>>>>
>>>..........))).]]....>>>>>....>>>..>>.....>>>>>>
>>>...<<<<<.......>>>>>.>>>>>>....
Receptor-Ligand Complex Structure
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PDB4v6t The complex of tmRNA-SmpB and EF-G on translocating ribosomes.
Resolution8.3 Å
Binding residue
(original residue number in PDB)		K71 S72 V73 A74 G75 F76 K77 I78 R79 Q80 Y82 R111 D112 R132
Binding residue
(residue number reindexed from 1)		K71 S72 V73 A74 G75 F76 K77 I78 R79 Q80 Y82 R111 D112 R132
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v6t, PDBe:4v6t, PDBj:4v6t
PDBsum4v6t
PubMed22622583
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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