Structure of PDB 4v7e Chain BE Binding Site BS01

Receptor Information
>4v7e Chain BE (length=200) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISI
PKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTY
DGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRV
GVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGK
Ligand information
>4v7e Chain Ad (length=1762) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaauuugaacugugaaacugcgaauggcuc
auuaaaucaguuauaguuuguuugaugguacgugcuacucggauaaccgu
aguaauucuagagcuaauacgugcaacaaaccccgacuucugggaggggc
gcauuuauuagauaaaaggcugacgcgggcucugcucgcugauccgauga
uucaugauaacucgacggaucgcacggccuucgugccggcgacgcaucau
ucaaauuucugcccuaucaacuuucgaugguaggauaggggccuaccaug
guggugacgggugacggagaauuaggguucgauuccggagagggagccug
agaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaa
uccugacacggggagguagugacaauaaauaacaauaccgggcgcauuag
ugucugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccau
uggagggcaagucuggugccagcagccgcgguaauuccagcuccaauagc
guauauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccg
gccggcaucgcgcuccuagccuuaauuggccgggucguguuuccggcauc
guuacuuugaagaaauuagagugcucaaagcaagccaucgcucuggauac
auuagcaugggauaacaucauaggauuccgguccuauuguguuggccuuc
gggaucggaguaaugauuaauagggacagucgggggcauucguauuucau
agucagaggugaaauucuuggauuuaugaaagacgaacaacugcgaaagc
auuugccaaggauguuuucauuaaucaagaacgaaaguugggggcucgaa
gacgaucagauaccguccuagucucaaccauaaacgaugccgaccaggga
ucggcggauguugcuuauaggacuccgccggcaccuuaugagaaaucaaa
gucuuuggguuccggggggaguauggucgcaaggcugaaacuuaaaggaa
uugacggaagggcaccaccaggcguggagccugcgcuuaauuugacucaa
cacggggaaacuuaccagguccagacauagcaaggauugacagacugaga
gcucuuucuugauucuaugggugguggugcauggccguucuuaguuggug
gagcgauuugucugguuaauuccguuaacgaacgagaccucagccugcua
acuagcuaugcggagccaucccuccgcagcuagcuucuuagagggacuau
ggccguuuaggccacggaaguuugaggcaauaacaggucugucaugcccu
uagauguucugggccgcacgcgcgcuacacugauguauucaacgaguaua
uagccuuggccgacaggcccggguaaucuugggaaauuucaucgugaugg
ggauagaucauugcaauuguuggucuucaacgaggaaugccuaguaagcg
cgagucaucagcucgcguugacuacgucccugcccuuuguacacaccgcc
cgucgcuccuaccgauugaaugguccggugaaguguucggaucgcggcga
cgggggcgguucgccgcccccgacgucgcgagaaguccauugaaccuuau
cauuuagaggaagcagaagucguaacaagguuuccguaggugaaccugcg
gaaggaucauug
...<<<<....[[[[.>>>>.<<<.<<<<<<...<.<<..<......<<<
.<<<..<<...<<.....<<...........>>....>>>>......<<.
.......<<<..<<..<<....<<<<<............<<.....<..<
<<.....>>>..>......>>..........<<<............>>>.
<...<..<<<.....[[[.(((((<<<.........>>>...........
....>>>.>......>........<<<<......>>>.>.....>>>>>.
..>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>
>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<...
.......>>>.>>...<<....>>.....>>>>>>.........<<<...
.<<<.....>>>..>>>..>>...>.>.....<<.<<.<<..........
....>>.>>..>>......<<.................>>.........<
<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>>..>>
>>>>>>>..........<.<{{.....<.<<...<<<.<.....<.<<<<
..>>>>.>...<..............<<<.....>>>............>
<<<<<<.<<.......<<...<.......>...<.......>.....>>.
.....>>.>>..>>>>.........<<<<<<<<<<.....))))).]]].
>>>>>>>>>>.......>....<<<<<<.<<...<<<<..<<..<<<<<<
<<...<<<......>>>......>>>>>>>>..>>.......<<....>>
...>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<<...<...
<<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<..
<<<<<<<<.<<<........>>>>>>>>>>>..>>>...<<..}}>>...
>>.....>>>.>.>.<<<......<<<<....>>>>....>>>..]]]].
.<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<.......<<......
..>>..........<<<<<.<....<<<<<........<<.<<<......
..>>>.>>......>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<
<<....>>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<
<..<<......<<<<......>>>>........>>..>>>>.>>.....<
<<<<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>>
.....>.>>>>>......>>>>.>>>.....<<<<.<.......<<....
...<<<.<<<<....>>>>.>>>....>>........>.>>>>.......
....<<<<<<..........>>>>>>..........>>>>>>....<<<<
<<<<.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..
<<.<..<.<<.<<....<<<<<<<..<<<..<<<<..<...<<...<<<.
<<<<<<<<<....>>>>>>>>>.>>>...>>...>..>>>>..>>>..>>
>>>>>...>>.>>.>...>.>>...>.....<<<<<<<<<....>>>>>>
>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7e Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Resolution5.5 Å
Binding residue
(original residue number in PDB)		R49 K53 Y58 R59 E60 M66 K75 K80 T105 K106 F131 Q133 K134 Y138 N140 G144 G185 R187 N188 E199 H201 E206 T207 F218 A219 T220 R221 N224
Binding residue
(residue number reindexed from 1)		R7 K11 Y16 R17 E18 M24 K33 K38 T63 K64 F89 Q91 K92 Y96 N98 G102 G143 R145 N146 E157 H159 E164 T165 F176 A177 T178 R179 N182
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Apr 18 07:27:40 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7e', asym_id = 'BE', bs = 'BS01', title = 'Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7e', asym_id='BE', bs='BS01', title='Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412', uniprot = '', pdbid = '4v7e', asym_id = 'BE'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412', uniprot='', pdbid='4v7e', asym_id='BE')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>