Structure of PDB 4v8q Chain BD Binding Site BS01 |
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>4v8q Chain BA (length=1504)
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uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcgggguuuuacuccguggucagcggcggacg ggugaguaacgcgugggugaccuacccggaagagggggacaacccgggga aacucgggcuaaucccccauguggacccgccccuugggguguguccaaag ggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggg guaauggcccaccaaggcgacgacggguagccggucugagaggauggccg gccacaggggcacugagacacgggccccacuccuacgggaggcagcaguu aggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggag gaagaagcccuucgggguguaaacuccugaacccgggacgaaacccccga cgaggggacugacgguaccgggguaauagcgccggccaacuccgugccag cagccgcgguaauacggagggcgcgagcguuacccggauucacugggcgu aaagggcguguaggcggccuggggcgucccaugugaaagaccacggcuca accgugggggagcgugggauacgcucaggcuagacggugggagagggugg uggaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccg auggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcg uggggagcaaaccggauuagauacccggguaguccacgcccuaaacgaug cgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgc gccgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggg ggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaaga accuuaccaggccuugacaugcuagggaacccgggugaaagccuggggug ccccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucg ugccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguu aguugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcg ggaggaaggaggggacgacgucuggucagcauggcccuuacggccugggc gacacacgugcuacaaugcccacuacaaagcgaugccacccggcaacggg gagcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccg accccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcggu gaauacguucccgggccuuguacacaccgcccgucacgccaugggagcgg gcucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggc ccgugacugggaagaagucguaacaagguagcuguaccggaaggugcggc ugga |
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<.<........>>>>>>>>.>>>>>..... .<<.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<... ...>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..< <<<...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<< .......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>> >>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>> >........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<< ......<<<<....>>>>.....>>>>....<<<<<........<<<<.. ...>>>>..........>>>>>......<<<<<(((...<<<<<.....< <.)))>>.......>>>>>>>>>>..>>>>>>>>>..........<<<(( .....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.... .>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<< <....<<<<<<<.<..<<<......>>>.....>.>>>>>>>........ ...<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<< <<<...<<...<<<<.........>>>>...>>>>>>>>..........< <<<<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>> >>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.< <<<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>.... ......<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>... .<<.....>>....>>>>>>>>.<<<.<<<..<<<<<<.......<<<<< <<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<< <<...<....<<.....>>.>.....>>>>>>>.....<<<<<....>>> >>........>>>>.........>>>...>>>>>>>>>...>>>>>>>.. .>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>> ..>>....>>>.....>>>>>>>......<....<<<<<<<........> >>>>>>....>.....>>>>>>....<<<<<<<..........>>>>>>> ......>>...>>>>>>>>>>.>>....<..<<.<.<..<.<<<..<<<< <<<<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>> >>>>..>>>.>..>..>.>>...>.....<<<<<<<<<....>>>>>>>> >... |
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PDB | 4v8q Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. |
Resolution | 3.1 Å |
Binding residue (original residue number in PDB) | G2 R3 I5 P7 V8 C9 R10 R13 R14 K22 E24 R25 K30 R35 R36 Y38 P40 G41 Q42 H43 S52 Y54 A55 L58 K61 Q62 R66 S71 E72 R73 Q74 N77 V112 S113 R115 Q116 Q119 R122 H123 H125 R132 D134 L135 S137 R141 L155 E156 L157 E205 S208 R209 |
Binding residue (residue number reindexed from 1) | G1 R2 I4 P6 V7 C8 R9 R12 R13 K21 E23 R24 K29 R34 R35 Y37 P39 G40 Q41 H42 S51 Y53 A54 L57 K60 Q61 R65 S70 E71 R72 Q73 N76 V111 S112 R114 Q115 Q118 R121 H122 H124 R131 D133 L134 S136 R140 L154 E155 L156 E204 S207 R208 |
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Enzyme Commision number |
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