Structure of PDB 7o4a Chain BBB Binding Site BS01

Receptor Information
>7o4a Chain BBB (length=478) Species: 93062 (Staphylococcus aureus subsp. aureus COL) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRGKIYDRNGKVLAEDVERYKLVAVDKKETAKKLSTVINMKPEEIEKRLS
FGRKGTNLTYQDKLKIEKMNLPGISLLPETERFYPNGNFASHLIGRAQKN
PDTGELKGALGVEKIFDSYLSGSKRGDDVHLTIDSNIQVFVEEALDGMVE
RYQPKDLFAVVMDAKTGEILAYSQRPTFNPETGKDFGKKWANDLYQNTYE
PGSTFKSYGLAAAIQEGAFDPDKKYKSGHRDIMGSRISDWNRVGWGEIPM
SLGFTYSSNTLMMHLQDLVGADKMKSWYERFGFGKSTKGMFDGEAPGQIG
WSNELQQKTSSFGQSTTVTPVQMLQAQSAFFNDGNMLKPWFVNSVENPVS
KRQFYKGQKQIAGKPITKDTAEKVEKQLDLVVNSKKSHAANYRIDGYEVE
GKTGTAQVAAPNGGGYVKGPNPYFVSFMGDAPKKNPKVIVYAGMSLAQKN
DQEAYELGVSKAFKPIMENTLKYLNVGK
Ligand information
Ligand IDYPP
InChIInChI=1S/C23H29N5O8S/c1-4-27-10-11-28(19(31)18(27)30)22(36)25-13(12-8-6-5-7-9-12)16(29)24-14(20(32)33)17-26-15(21(34)35)23(2,3)37-17/h5-9,13-15,17,26H,4,10-11H2,1-3H3,(H,24,29)(H,25,36)(H,32,33)(H,34,35)/t13-,14+,15+,17-/m1/s1
InChIKeyOKSUEATVFIVTFV-WBTNSWJXSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCN1CCN(C(=O)N[CH](C(=O)N[CH]([CH]2N[CH](C(O)=O)C(C)(C)S2)C(O)=O)c3ccccc3)C(=O)C1=O
OpenEye OEToolkits 1.7.0CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccccc2)C(=O)N[C@@H]([C@@H]3N[C@H](C(S3)(C)C)C(=O)O)C(=O)O
ACDLabs 12.01O=C(NC(C(=O)O)C1SC(C(N1)C(=O)O)(C)C)C(c2ccccc2)NC(=O)N3C(=O)C(=O)N(CC)CC3
OpenEye OEToolkits 1.7.0CCN1CCN(C(=O)C1=O)C(=O)NC(c2ccccc2)C(=O)NC(C3NC(C(S3)(C)C)C(=O)O)C(=O)O
CACTVS 3.370CCN1CCN(C(=O)N[C@@H](C(=O)N[C@@H]([C@@H]2N[C@@H](C(O)=O)C(C)(C)S2)C(O)=O)c3ccccc3)C(=O)C1=O
FormulaC23 H29 N5 O8 S
NameHydrolyzed piperacillin;
(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid
ChEMBL
DrugBank
ZINCZINC000077312497
PDB chain7o4a Chain BBB Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7o4a Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery.
Resolution3.028 Å
Binding residue
(original residue number in PDB)
G313 S314 W351 S368 F423 T514 T516 Q518 Y534 Y566
Binding residue
(residue number reindexed from 1)
G202 S203 W240 S257 F312 T403 T405 Q407 Y423 Y455
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008658 penicillin binding

View graph for
Molecular Function
External links
PDB RCSB:7o4a, PDBe:7o4a, PDBj:7o4a
PDBsum7o4a
PubMed34667534
UniProtA0A0H2WVW5

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