Structure of PDB 5jus Chain BB Binding Site BS01 |
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| >5jus Chain A (length=1781)
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uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagga
cguuugguucuauuuuguugguuucuaggaccaucguaaugauuaauagg
gacggucgggggcaucaguauucaauugucagaggugaaauucuuggauu
uauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaa
ucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucu
uaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugacc
cacucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguau
ggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggag
uggagccugcggcuuaauuugacucaacacggggaaacucaccaggucca
gacacaauaaggauugacagauugagagcucuuucuugauuuugugggug
guggugcauggccguucuuaguugguggagugauuugucugcuuaauugc
gauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcug
guuauccacuucuuagagggacuaucgguuucaagccgauggaaguuuga
ggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcgc
uacacugacggagccagcgagucuaaccuuggccgagaggucuugguaau
cuugugaaacuccgucgugcuggggauagagcauuguaauuauugcucuu
caacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacgu
cccugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuua
gugaggccucaggaucugcuuagagaagggggcaacuccaucucagagcg
gagaauuuggacaaacuuggucauuuagaggaacuaaaagucguaacaag
guuuccguaggugaaccugcggaaggaucau |
...<<<<<.{.[[[[>>>>><<<<.<<<<<<.....<..........<<<
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<<....<.
..<.......>...>.....>>.........<<<<<...<....>...>>
>>><...<<<<<.......((((((..<<......>>.............
..>>>>>.....>...<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>>>>.........<<<....<<<
.....>>>..>>>.......>.......<<<<<<<<<<<<......>>>>
>>>>>.>>>......<<..<...........>..>>.........<<<<<
((....<.<<<<.....<<..))>>.......>>>>>>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<.....<..>.....>>>>.>>>>>>.....<<<<<........<<....
.......>>........>>>>>.....<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>..........<
<...<<<<<<<.......))))))..>>>>>>>..>>.....>>....<<
<<<<.<<...<<<<...<<.<.<<<<.<...<<........>>......>
.>>>>..>>>........<<....>>...>>>>..>.>>>>.>>>...>>
>...>>.>....<<<.<.....<...<.<...........>.>...>..>
.>>>..........<<<.<<..<<<.<<<<<<<<.<<<........>>>>
>>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......
<<<......>>>....>>>..]]]].}<<<<<.<<<<<<<..<<..<<<<
...<<<.<<<<<<......<..........>..........<<<<<....
..<<<<<........<<..<<........>>..>>......>>>>>...<
<.<<<..<<.<<<<<.....<<<.<<<<<....>>>...<<<......>>
>...>>.>>>....<<<<..<<..<<<<..<<<<<.<<<<<<....>>>>
>>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>........>>
>>.....>>.>>>.....>>>>>>>.......>>>>>...>>.>>>>.>>
>.....<<<<<<<......<<.....<<..<<<<....>>>>..>>....
>>.......>>>>>>>...........<<<<<<..........>>>>>>.
..........>>>>.....<<<<<<<<.......>>>>>>>>......>>
...>>>>>>>>>>.>>.......<<....<<<<.<<....<<<<<<<<.<
<<..<.<<..<...<<<<<<...<<<.<<.......>>..>>>...>>>>
>>...>..>>.>..>>>.>>>>>>>>...>>.>>>>.....>>.......
...<<<<<<<......>>>>>>>........ |
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| PDB | 5jus Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome. |
| Resolution | 4.2 Å |
Binding residue
(original residue number in PDB) | A2 R3 G4 P5 K6 K7 H8 K10 H16 L19 D21 K22 L23 C26 Y27 A28 P29 R30 S32 A33 G34 H36 K37 L38 R49 R51 N57 K62 M66 K75 R77 T81 Y82 K106 R108 K128 V129 L131 G132 K133 K134 G135 Y138 V140 T146 R148 K155 V156 R187 H197 K198 H201 D202 G203 R221 I248 |
Binding residue
(residue number reindexed from 1) | A1 R2 G3 P4 K5 K6 H7 K9 H15 L18 D20 K21 L22 C25 Y26 A27 P28 R29 S31 A32 G33 H35 K36 L37 R48 R50 N56 K61 M65 K74 R76 T80 Y81 K105 R107 K127 V128 L130 G131 K132 K133 G134 Y137 V139 T145 R147 K154 V155 R186 H196 K197 H200 D201 G202 R220 I247 |
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| Enzyme Commision number |
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