Structure of PDB 4v7h Chain B8 Binding Site BS01

Receptor Information
>4v7h Chain B8 (length=118) Species: 5541 (Thermomyces lanuginosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVL
MGKNTMVRRAIRGFLSDLPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVS
NRVAAPARAGAVAPEDIW
Ligand information
>4v7h Chain B5 (length=3170) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuugaccucaaacagguaggaguacccgcugaacuuaagcauaucaaua
agcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaag
cggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaa
uuuggagagggcaacuuuggggccguuccuugucuauguccuuggaacag
gacgucauagggggugagaaucccgugugcgaggagugcgguucuuugua
aagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggug
gaaauucaucuaaagcuaaauauuggcgagagaccgauagcgaacaagua
cagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgu
gaaauuguugaaagggaagggcauuugaucacaugguguuuugugcccuc
ugcuccuuguggguaggggaaucucgcauuucacugggccagcaucaguu
uugguggcaggauaaacccauaggaauguagcuugccucgguaaguauua
uagccugugggaauacugccagcugggacugagugaaaugacguaaguca
aggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaa
ggagucuaacgucuaugcgaguguuuggguaaaccauacgcguaaugaaa
gugagcguagguuggggccucgcaagaggugcacaaucgaccgauccuga
ugucuucggauggauuugaguaagagcauagcuguugggacccgaaagau
ggugaacuaugccugaauagggugaagccagaggaaacucugguggaggc
ucguagcgguuugacgugcaaaucgaucgucgaauuuggguauaggggcg
aaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccuca
ggauagcacgaagcucguuuuaugagguaagcaaugauuagaggucgggg
ucgaaagaccuugaccuauucucaaacuuuaaauauguaagaaguccuug
uuacuuaauugaacguggacauuugaaugagagcuuuuagugggccauuu
uugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggu
gccggaauacacgcucaucaacaaaagguguuaguucaucuagacagccg
gacgguggccauggaagucggaauccgcuaaggaguguguaacaacucac
cggccgaaugaacuagcccugaaaauggauggcgccaagcguguuaccua
uacucuaccgucagggugcccugacgaguaggcaggcguggaggucguga
cgaagccugaccguaaggucgggucgaacggccucuagugcagaucuugg
ugguaguagcaaauauucaaaugagaacuuugaagacugaagggggaaag
guuccacgucaacagcaguuggacguggguuagucgauccuaagagaugg
ggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaggga
auccgguuaagauuccggaaccuggugguucuucacgguaacguaacuga
auguggagacgucgcgagcccugggaggaguuaucuuuucuucuuaacag
cuuaucacccgaauugguuuauccggaauggggucuuauggcuggaagag
gccagcaccuuugcuggcuccggugcgcuugacggccgugaaaauccaca
ggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuc
caaggugaacagccucuaguugauagaauaaugugauaagggaagucggc
aaaauagauccguaacuucgggauaaggauuggcucuaaguuagaacugg
uacggacaaggggaaucugacugucuaauuaaaacauagcauugcgaugg
ucaaaagugauguugacgcaaugugauuucugcccagugcucgaauguca
aagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugac
ucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaa
uggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccaca
gccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguuga
gcuugacucuaguuugacauugugaagagacauagaggguguagaauaag
ugggagcuucggcgccagugaaauaccacuaccuuuauguuucuuuacuu
auucaaugaagcggagcuggaauuaauuuuccacauccuuguguauaggg
ucccauucggggcugauccggguugaagacauugucagguggggaguuug
gcuggggcggccaucuguuaaacgauaacgcagauguccuaaggggggcu
cauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuuga
uuuugauuuucgugugaauacaaaccaugaaaguguggccuaucgauccu
uuagccucgaauuugaggcuagaggugccagaaaaguuaccacagggaua
acuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuu
cgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguugga
uuguucacccacuaauagggaacgugagcuggguuuagaccgucgugaga
cagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacu
uaguacgagaggaacaguucauucggauaauugguuuuugcggcugucug
aucaggcauugccgcgaagcuacauccgcuggauuauggcugaacgccuc
uaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaaua
uguaccuuuuguauaauggcguccuuguggcgucuaccuuuuguauaaug
cuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgugaa
auugaacuauuuugcguggggaaaaucauuuguauacgacuuagauguac
aagggguauuguaagcaguagaguagccuuguuguuacgaucugcugaga
uuaccuuuugucugauuugu
.........................<<<<<<...................
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.(((....>>>..>>>..................................
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...................<<<<<..<.<......<<<...<.....<(<
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<.<<<<<<<<........<<<<<<......<<<<<<<..>>>>>>>....
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....>>>>.........>.>..>>>>>...<<<........>>>..<<<<
<......<<<<.<<<<<<....<(.<<<.....>>>..>)..........
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<..<......>.>>>.>>>...............>>...>>..<<<<.<<
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........<<.....<<<<<<.......>>>>>>.<<<<...<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....<<((....<......<.<
<<....>>>>.......<<<<<<........>>>>>>.........>...
..<<<<........>>>>.>><<<<<<<......<<<....>>>......
..........<<<<...<...<.<<<<<<......[..>>>>>><..<<<
<............<.<.......>.>..............>>>>....>.
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>.<<<<.....>>>>.>>>>.....<<.....<.<<<<.<<.........
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..........<<<<<<<<...<<<.........>>>..<<..<<<.....
<<<....>>>.......>>>..>>....<...<<..<<<<<<<....<..
....................>..>>>>>..>>>>.<<<<<.........>
>>>>........<.................................>...
..>......>.>>>>>>>.....>>.>>>>..>..>>..>>.........
.<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<.
.<<..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<...............
.<<......................>>.......>>>>>>>>>>>>>>..
.<<<<......<<<<...<<<<......>>>>..................
<<<......>>>....>>>>...>>>>.....>>>>>>>>..>>>>>...
<<<.....>>>...<<<<...........>>>>.........<.<<<<<.
..<<<<<<.......>>>>>>.....<<..[.((>>....>>>>.>>...
<<<...<<<......>>>...>>>..............))].........
<<<<..<....)))..>.>>>>............>>....>>>>>>....
....<.....<<<<<....<<.......>>....>>>>>......>....
.......<<<...<<<<..<.<<<<<<<......>>>>>>>...>.<<<.
........>>>.....>>>>.......>>>.......<<<<<<<....>>
>.>>>>....>>..>>>.>>>>>......<<<......<<<...<<<<<.
................>>>>>...<<<.....<.<..<<<<<<...<<<.
]..>>>.....>>>>>>.>.>...>>>...<<....<<<<<.........
..>>>>>....>>..>>>........>>>...........<.<<.<<<..
...................<<<.......>>>.................<
<<<<<<<..<<<...<.<<........>>..>..>>>>>>>>>>>.....
..........>>.>.>>>.....<<<..<..<.......>..>......<
<<<<<<.<<.....<<<<....<<<<<......>>>>>...>>>>....>
>..>>>>>>>....>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7h Comprehensive molecular structure of the eukaryotic ribosome.
Resolution8.9 Å
Binding residue
(original residue number in PDB)
G3 I4 R5 K7 K8 Y11 F12 L15 V30 N32 V33 S34 S35 Q36 M38 H39 R42 R46 G47 R48 A49 V50 V51 L52 M53 G54 K55 N56 T57 M58 R60 R61 K81 G82 Y83 G85 F86
Binding residue
(residue number reindexed from 1)
G1 I2 R3 K5 K6 Y9 F10 L13 V28 N30 V31 S32 S33 Q34 M36 H37 R40 R44 G45 R46 A47 V48 V49 L50 M51 G52 K53 N54 T55 M56 R58 R59 K79 G80 Y81 G83 F84
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